Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30400
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    37   0.003
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    30   0.28 
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    28   1.1  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.0  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.6  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   4.5  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    26   6.0  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   6.0  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 23/84 (27%), Positives = 35/84 (41%)
 Frame = +1

Query: 253 SYTETTILETLRLSSIVPLATTHSPTRDVQINGYKIPAGSQVIPLINCVHMDPNLWDEPN 432
           +YT   + E LRL   V +              Y +P  + VIP +     D  ++ EP 
Sbjct: 370 TYTRAVVKECLRLRPPVLMVPYRVKKAFPITPDYTVPKDAMVIPTLYGALHDSKVYPEPE 429

Query: 433 KFNPSRFIDATGKIRRPEYFMPFG 504
            FNP R+       + P+ +M FG
Sbjct: 430 TFNPDRWAPNGLAEQSPKNWMVFG 453



 Score = 33.1 bits (72), Expect = 0.039
 Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
 Frame = +2

Query: 2   LIEIEKAKSEGRAGE------LFEGRDHELQLKQILGDLFSAGMETIKSSLLWMIVFMLR 163
           +IE  K KSE + G       + E  D E+ L   L  LF A  +   S++ W+   +  
Sbjct: 280 MIETRKYKSENKEGAEKPSVLIREFSDEEISLT-FLSFLF-ASQDATSSAMTWLFQLLAD 337

Query: 164 NPDVKRRVQEE 196
           +PDV ++V+EE
Sbjct: 338 HPDVLQKVREE 348


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 419 GMNQTNSILVDSSTRPAR*DVRNI 490
           G N+ N++L D ST PA+ D+RN+
Sbjct: 485 GNNKENTMLNDGSTAPAKNDIRNV 508


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +2

Query: 59  RDHELQLKQILGDLFSAGMETIKSSLLWMIVFMLRNPDVKRRVQEELDAVIG 214
           ++HE+    I   L  AG  T  ++++W++  +   P++   + EE   V+G
Sbjct: 274 KEHEIAGMMIA--LLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVG 323


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -1

Query: 602 FSHFQVELVHHTRKEHEHLFAGQYVAQTHSSAT 504
           F+H+ + + +HT    +H   G YV      +T
Sbjct: 177 FNHYDIVIEYHTTSSDQHRVVGAYVKPVSKEST 209


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 545 FAGQYVAQTHSSATPNGMKYSGRLILPVASMNLLGLNLFGSSQRFGSMCTQLIS 384
           F   Y      S+ PN   ++G  ILP  S +L  +  + + Q+ GS  T + S
Sbjct: 143 FENNYSVLPDHSSQPNAYSFTGSNILPTQSPSLNQMQDYQNLQQNGSSNTTIPS 196


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 12  SRRRRARAGPVNSSKEEIMNYN*NKYLEIFSLL 110
           S+RRR+R+   N  KE  MN + +   E+F  L
Sbjct: 208 SKRRRSRSSAKNLEKESTMNLDDHAPREMFDCL 240


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 167 PDVKRRVQEELDAVIGRERLPSIDDISSLHTPKLQFWKR*DYQALFLWQPHILRL 331
           P    R  ++  +V+G+  L  +   S + T       R  + AL L QPHIL L
Sbjct: 482 PKFPERELQQWRSVLGKFGLSGLHQTSEIRTLSDGLKSRVVFAALALEQPHILLL 536


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -3

Query: 612 ASPFQPFPSRIGASYTKRT*TSLCGPIRRPNTFFGDPEWHEIF 484
           +SPF  +P  +      R   +   P  R N ++ DP W+  F
Sbjct: 451 SSPFSYYPESLPTPLLGRAVNTTAFPTSRQNAYYNDP-WNLYF 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,331,649
Number of Sequences: 5004
Number of extensions: 78327
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)