Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30398
(527 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 112 4e-24
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 58 9e-08
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 51 2e-05
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 50 3e-05
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 47 2e-04
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 44 0.002
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 42 0.009
UniRef50_Q8DAV3 Cluster: Rec2-related protein; n=2; Vibrio vulni... 38 0.14
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 38 0.14
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 36 0.44
UniRef50_A1D5S3 Cluster: Short chain dehydrogenase/reductase fam... 35 1.3
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 33 3.1
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 33 4.1
UniRef50_A5K004 Cluster: Putative uncharacterized protein; n=1; ... 32 7.1
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 32 9.4
UniRef50_Q5F5H4 Cluster: Putative uncharacterized protein; n=2; ... 32 9.4
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 32 9.4
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 112 bits (270), Expect = 4e-24
Identities = 54/73 (73%), Positives = 56/73 (76%)
Frame = +2
Query: 62 PRNYDLGNGVLRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVP 241
PRNYDLGNGV+RFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGTRTVP
Sbjct: 29 PRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVP 88
Query: 242 LKRRSPSTPLRRK 280
LKRR P + K
Sbjct: 89 LKRRKSFYPTQEK 101
Score = 106 bits (254), Expect = 4e-22
Identities = 55/74 (74%), Positives = 58/74 (78%)
Frame = +1
Query: 253 ESFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGL 432
+SFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRH R V+ + LP GL
Sbjct: 93 KSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL--VGILPSGL 150
Query: 433 LFS*LGPFAFKFVP 474
L GPFAF P
Sbjct: 151 LLV-TGPFAFNSCP 163
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 58.4 bits (135), Expect = 9e-08
Identities = 29/69 (42%), Positives = 38/69 (55%)
Frame = +2
Query: 62 PRNYDLGNGVLRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVP 241
P+N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R +P
Sbjct: 25 PKNHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
Query: 242 LKRRSPSTP 268
LK+ S P
Sbjct: 85 LKKERRSYP 93
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 50.8 bits (116), Expect = 2e-05
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +1
Query: 259 FYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGL 432
+YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH R V L+ L GL
Sbjct: 115 YYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKR--VVFLKQLASGL 172
Query: 433 LFS*LGPFAFKFVP 474
L GP VP
Sbjct: 173 LLV-TGPLVLNRVP 185
Score = 45.2 bits (102), Expect = 0.001
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Frame = +2
Query: 65 RNYDLGNGVLRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 232
RN L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 46 RNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
Query: 233 TVPLK---RRSPSTPLRRKSVLH 292
V L+ R P+ + RK + H
Sbjct: 106 VVKLRKMPRYYPTEDVPRKLLSH 128
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 50.4 bits (115), Expect = 3e-05
Identities = 33/71 (46%), Positives = 39/71 (54%)
Frame = +1
Query: 262 YPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLLFS 441
YPT+ ++ FS+H R R NL GTV ILLAGRH Q + VV L+ L GLL
Sbjct: 88 YPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRH-QGKRVV-LLKVLASGLLLV 145
Query: 442 *LGPFAFKFVP 474
GPFA P
Sbjct: 146 -TGPFALNSCP 155
Score = 50.0 bits (114), Expect = 3e-05
Identities = 27/71 (38%), Positives = 38/71 (53%)
Frame = +2
Query: 62 PRNYDLGNGVLRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVP 241
P N L G+LR+SK++M+ ++A Y+ VK+IGG KNGG RTV
Sbjct: 21 PVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERTVF 80
Query: 242 LKRRSPSTPLR 274
LK+ S P +
Sbjct: 81 LKKSKASYPTK 91
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 47.2 bits (107), Expect = 2e-04
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Frame = +2
Query: 65 RNYDLGNGVLRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 244
RN +L G+ R+S+S ++ K+A YK T K IGG+KNGG R VP+
Sbjct: 11 RNPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPV 69
Query: 245 KRRS---PSTPLRRK 280
+R S P+ +RR+
Sbjct: 70 QRESRYYPTEDVRRR 84
Score = 35.1 bits (77), Expect = 1.0
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 223 GNQNSTPQT*ES-FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGV 399
G + P ES +YPT++ +R R + ++R ++ GTV ILLAG H R
Sbjct: 62 GGKRVVPVQRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKR-- 117
Query: 400 VPCLEFLPRGLLFS*LGPFAFKFVP 474
V L+ L GLL GPF VP
Sbjct: 118 VVFLKQLNSGLLLV-TGPFKINGVP 141
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 44.0 bits (99), Expect = 0.002
Identities = 28/56 (50%), Positives = 34/56 (60%)
Frame = +1
Query: 307 FSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLLFS*LGPFAFKFVP 474
FS HVR+IR +++ GTV ILLAG H R V L+ L GLL GPF + VP
Sbjct: 80 FSNHVRKIRSSIQPGTVLILLAGPHKGKR--VIFLKALKSGLLLV-TGPFKYNGVP 132
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 41.9 bits (94), Expect = 0.009
Identities = 28/56 (50%), Positives = 35/56 (62%)
Frame = +1
Query: 307 FSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLLFS*LGPFAFKFVP 474
F+ H RRIR ++ G V ILLAGRH +A+ VV L+ L GLL GPF + VP
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRH-RAKRVV-FLKSLASGLLLV-TGPFKYNGVP 138
>UniRef50_Q8DAV3 Cluster: Rec2-related protein; n=2; Vibrio
vulnificus|Rep: Rec2-related protein - Vibrio vulnificus
Length = 749
Score = 37.9 bits (84), Expect = 0.14
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -3
Query: 507 SHSAEGIPALAGHEFESKRAQLTKKQTPWEEFQTRYNP-SCLAMSTSEENANSSYLQVGS 331
SH P + GH+FE + ++T P + YNP SC+ EEN S+L G
Sbjct: 579 SHYLSDFPCVKGHDFEWQGLKMTVLWPP-RQVTRAYNPHSCVIRMEDEEN-QFSFLMTGD 636
Query: 330 DPAYMLAEWTATR 292
A LAEW R
Sbjct: 637 IDA--LAEWILIR 647
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 37.9 bits (84), Expect = 0.14
Identities = 24/74 (32%), Positives = 41/74 (55%)
Frame = +1
Query: 253 ESFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGL 432
+ +YP ++ + + + H ++RP+L+ GT+ ILLAGR R ++ L+ L +G+
Sbjct: 31 QKWYPADDEPQPKKARK--TAHPTKLRPSLQPGTILILLAGRFRGKRVIL--LKHLGQGV 86
Query: 433 LFS*LGPFAFKFVP 474
L GPF VP
Sbjct: 87 LLV-TGPFKLNGVP 99
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 36.3 bits (80), Expect = 0.44
Identities = 26/64 (40%), Positives = 35/64 (54%)
Frame = +1
Query: 283 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLLFS*LGPFAF 462
R S R S ++R +L+ G VCILLAG + R V+ L+ LP GL+ GP+A
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVM--LKALPSGLVVV-TGPYAL 76
Query: 463 KFVP 474
VP
Sbjct: 77 NGVP 80
>UniRef50_A1D5S3 Cluster: Short chain dehydrogenase/reductase family
oxidoreductase, putative; n=1; Neosartorya fischeri NRRL
181|Rep: Short chain dehydrogenase/reductase family
oxidoreductase, putative - Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / NRRL 181)(Aspergillus
fischerianus (strain ATCC 1020 / DSM 3700 / NRRL 181))
Length = 318
Score = 34.7 bits (76), Expect = 1.3
Identities = 23/77 (29%), Positives = 36/77 (46%)
Frame = -3
Query: 525 WVGGAPSHSAEGIPALAGHEFESKRAQLTKKQTPWEEFQTRYNPSCLAMSTSEENANSSY 346
W+G P+H ++ +P F + R L TPWEE+ R P L SEE ++
Sbjct: 155 WMGQQPNHKSKSVPPHI--VFVTSRDHLDPDITPWEEYSAR--PGGLLRFFSEE---QNW 207
Query: 345 LQVGSDPAYMLAEWTAT 295
+ DP Y +++ T
Sbjct: 208 PRGALDPNYAVSKLALT 224
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 33.5 bits (73), Expect = 3.1
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 259 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLL 435
FYP + K R S +P + ++R ++ GTV ILLAGR R V L+ L GLL
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKR--VVFLKQLKSGLL 107
Query: 436 FS*LGPFAFKFVP 474
GPF VP
Sbjct: 108 LV-TGPFKINGVP 119
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 33.1 bits (72), Expect = 4.1
Identities = 25/72 (34%), Positives = 37/72 (51%)
Frame = +1
Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLLF 438
+YP +K + K + +RP++K GT+ ILLAG +R VV L+ L G L
Sbjct: 46 WYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVILLAGVFRGSRVVV--LKQLDSGQLL 102
Query: 439 S*LGPFAFKFVP 474
GP+A +P
Sbjct: 103 V-TGPYAVNRIP 113
>UniRef50_A5K004 Cluster: Putative uncharacterized protein; n=1;
Plasmodium vivax|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 2211
Score = 32.3 bits (70), Expect = 7.1
Identities = 24/84 (28%), Positives = 39/84 (46%)
Frame = +2
Query: 209 GEKNGGTRTVPLKRRSPSTPLRRKSVLHLVAVHSASMYAGSDPT*R*ELFAFSSLVDIAR 388
GE G T+T+P+ + +R + L H ++G P LFA S+LVD+ +
Sbjct: 874 GETTGQTKTIPIAHKCKRAIQKRVTKLLSRNPHLMFHFSGHAP-----LFA-STLVDMLK 927
Query: 389 QEGLYLVWNSSQGVCFLVNWALLL 460
+ +L N S VN+ +L
Sbjct: 928 KNNYFLYQNDSYRFAVSVNYLYML 951
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 31.9 bits (69), Expect = 9.4
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 65 RNYDLGNGVLRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTVPL 244
RN L G R+S ++ +K Y + + V+K + G+KNGGT V L
Sbjct: 49 RNPILVRGTGRYSIKALYERK--YSAVKSKCEKKKKEKVVATVIKTVSGDKNGGTGVVKL 106
Query: 245 KR 250
++
Sbjct: 107 QK 108
>UniRef50_Q5F5H4 Cluster: Putative uncharacterized protein; n=2;
Neisseria|Rep: Putative uncharacterized protein -
Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090)
Length = 70
Score = 31.9 bits (69), Expect = 9.4
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +3
Query: 378 TLPGKRGCTLFGIPPKGSAF*LTGPFCFQIR-APLTPVF 491
TL G+R C LFG+ P G +C+Q+R APL +F
Sbjct: 8 TLGGQRHCVLFGLAPNGV---WPAAYCYQMRGAPLPHLF 43
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 31.9 bits (69), Expect = 9.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 188 VVVKQIGGEKNGGTRTVPLKRRSPSTPLRRK 280
V+ K+IGG+KNGGTR V ++ P+ +
Sbjct: 44 VIEKKIGGDKNGGTRLVSTRKPPQFYPINSR 74
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 558,542,233
Number of Sequences: 1657284
Number of extensions: 11459066
Number of successful extensions: 28752
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 27876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28742
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33455602480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -