Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30398
         (527 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    30   0.25 
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    26   3.0  
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    26   4.0  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   7.0  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   7.0  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   9.2  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   9.2  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 22/50 (44%), Positives = 28/50 (56%)
 Frame = +1

Query: 325 RIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLLFS*LGPFAFKFVP 474
           ++R +L  GTVCILLAGR    R VV  L  L   L+ +  GP+    VP
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKRVVV--LSQLEDTLVVT--GPYKVNGVP 92


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = -3

Query: 384 AMSTSEENANSSYLQVGSDPAYMLAEWTATR*STDFLLSGVEGLLRLRGTVLVPPFFSPP 205
           AMS  +     ++     +P Y++ +W     S  +  S   GL      V V PF S  
Sbjct: 94  AMSPDQYCTAGTWCPYACEPGYLMGQWDPNATSYTYPESMYGGLYCNSDGVAVKPFPSKD 153

Query: 204 ICF 196
            C+
Sbjct: 154 YCY 156


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 377 LPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 273
           LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 31  LPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -2

Query: 151 FANELVFSLLVEHLGFGETQHSVAQIIVPRFFRRFFLSXATCRCGSRL 8
           F   L+F+L    +G G  Q+ +  +++ RFF+ FF S     CG  L
Sbjct: 169 FCTLLMFTLF--QIGGGCAQN-IWTLVILRFFQGFFGSTPLSNCGGTL 213


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 402 YNPSCLAMSTSEENANSSYLQV 337
           YNPS LA +    NAN+S++ +
Sbjct: 465 YNPSGLAFNPVNPNANNSFVNL 486


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 410 WNSSQGVCFLVNWALLLSNSCPANAGI 490
           W   Q +  LV+W L+ + SCP +  +
Sbjct: 215 WAIGQVIANLVSWGLISNFSCPDDESV 241


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 350 ELFAFSSLVDIARQEGLYLVWNSSQGVCFLV 442
           E+     L+  A  +G   VW +S GVC  V
Sbjct: 582 EVACLGDLIVSASYDGTLRVWKASTGVCLHV 612


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
 Frame = +2

Query: 212 EKNGGTRTVPLKRRSPSTPLRRKSVLHLVA------VHSASMYAGSD 334
           E+N   R  P+K  + ST LRR   L   A       +SA +Y G D
Sbjct: 344 EQNPEVRAHPMKDSATSTALRRSHALGAAADSLLPQENSAQIYDGKD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,224,944
Number of Sequences: 5004
Number of extensions: 44711
Number of successful extensions: 100
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)