Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30398
(527 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 33 0.14
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 32 0.33
08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861,352... 31 0.76
12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160 28 5.3
06_01_0829 - 6254769-6254852,6254940-6255024,6255158-6255245,625... 27 7.1
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 27 7.1
01_02_0044 - 10559637-10560509,10562849-10563295 27 7.1
10_06_0104 + 10786613-10788040 27 9.3
01_06_1743 + 39601644-39602023,39602301-39602734,39602828-396030... 27 9.3
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 33.1 bits (72), Expect = 0.14
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +1
Query: 259 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLL 435
FYP + K RA S + + ++R + GTV ILLAGR+ R V L+ L GLL
Sbjct: 50 FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKR--VVFLKQLKSGLL 104
Query: 436 FS*LGPFAFKFVP 474
GPF VP
Sbjct: 105 LI-TGPFKINGVP 116
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 31.9 bits (69), Expect = 0.33
Identities = 28/72 (38%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +1
Query: 265 PTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLLF 438
PT+ + +SS FS + + +R ++ GTV ILLAGR R V L+ L GLL
Sbjct: 71 PTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKR--VVFLKQLKSGLLL 128
Query: 439 S*LGPFAFKFVP 474
GPF VP
Sbjct: 129 V-TGPFKINGVP 139
>08_01_0399 +
3524723-3525272,3525468-3525544,3526816-3526861,
3527121-3527235,3528252-3528306,3528432-3528557
Length = 322
Score = 30.7 bits (66), Expect = 0.76
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 206 GGEKNGGTRTVPLKRRSPSTP-LRRKSVLHLVAVHSASMYAGSD 334
GG GG R V +R+P P +R S LH VH+ + G D
Sbjct: 140 GGCGGGGARGVLPAKRAPRAPRMRWTSTLHARFVHAVELLGGHD 183
>12_02_1144 + 26449490-26452292,26452401-26452742,26453141-26453160
Length = 1054
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -3
Query: 396 PSCLAMSTSEENANSSYLQVGSDPAYMLAEWTATR*STDFLLSGVEGLLRLRG 238
P C+A S+ E+ + + DP +L W T+ S ++ + + R RG
Sbjct: 26 PGCIAQSSDEQTLLAFKAAISGDPNGVLDTWVTTKGS----MNATDSICRWRG 74
>06_01_0829 -
6254769-6254852,6254940-6255024,6255158-6255245,
6255344-6255407,6255496-6255576,6256709-6256781,
6256871-6257385,6258168-6258284
Length = 368
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 420 EEFQTRYNPSCLAMSTSEENANSSYLQVGSDPAYMLAEWTAT 295
E QT Y+ L + S+E+A+ L S+P+ +L+E T
Sbjct: 150 ETVQTEYDAPGLELKGSKESASHDKLPAMSEPSMLLSETMRT 191
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 415 IPNKVQPLLPGNVYQRGECK 356
+P + PLLPG +Y ECK
Sbjct: 174 LPGTLYPLLPGTLYPLQECK 193
>01_02_0044 - 10559637-10560509,10562849-10563295
Length = 439
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 113 SWIWRNAALRCPDHSS*VFS*IFS*SSHLQVRQQAWP 3
+W R ALR P+ +S V F+ + HL AWP
Sbjct: 258 TWQARTRALRLPEPTSRVNLCFFANTRHLMAGAAAWP 294
>10_06_0104 + 10786613-10788040
Length = 475
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -2
Query: 430 DPLGGIPNKVQPLLPGNVYQRGECKQFLSSGWVGSCVHA 314
DP+ G ++ PL+PG + GECK+ + W+G + A
Sbjct: 116 DPVCGQWQRL-PLMPG-ISHGGECKRGIPGLWLGDLLSA 152
>01_06_1743 +
39601644-39602023,39602301-39602734,39602828-39603006,
39603636-39603716,39603828-39603914,39604000-39604006,
39604241-39604312,39604712-39604792,39605156-39605262
Length = 475
Score = 27.1 bits (57), Expect = 9.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 328 IRPNLKIGTVCILLAGRHCQ 387
++PN K+G+VC +L +C+
Sbjct: 353 LKPNDKMGSVCTILTNNYCE 372
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,871
Number of Sequences: 37544
Number of extensions: 344623
Number of successful extensions: 898
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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