Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30398
         (527 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   33   0.19 
SB_59412| Best HMM Match : NHL (HMM E-Value=1.9)                       29   3.1  
SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)             29   3.1  
SB_25484| Best HMM Match : TENA_THI-4 (HMM E-Value=0.79)               28   5.5  
SB_5851| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.5  
SB_56082| Best HMM Match : PAP2 (HMM E-Value=0.0099)                   27   9.6  
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)                27   9.6  
SB_25512| Best HMM Match : PAP2 (HMM E-Value=2)                        27   9.6  

>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 32.7 bits (71), Expect = 0.19
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 194 VKQIGGEKNGGTRTVPLKRRSPSTPLRRKSVLHLVAVHSASMYAGSDP 337
           VK++ G     TR VP++ ++   P +   V  LV  HS   Y GSDP
Sbjct: 257 VKEMLGLSPFATRDVPMRNKAIKLPKKAPPVF-LVCTHSDEPYEGSDP 303


>SB_59412| Best HMM Match : NHL (HMM E-Value=1.9)
          Length = 194

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 359 AFSSLVDIARQEGLYLVWNSSQGVC 433
           A SS  D    +GLY  WN+  G+C
Sbjct: 131 AISSSTDAGHCDGLYAQWNAPSGLC 155


>SB_289| Best HMM Match : Pkinase_Tyr (HMM E-Value=2.5e-32)
          Length = 773

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 380 IARQEGLYLVWNSSQGVCFLVNWALLLSNSCPANAGI 490
           + R+EG++L +   QG C  +   ++  N CP   GI
Sbjct: 161 VPRKEGIFLAFYD-QGACMSITKVVVSFNFCPPRGGI 196


>SB_25484| Best HMM Match : TENA_THI-4 (HMM E-Value=0.79)
          Length = 380

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 471 HEFESKRAQLTKKQTPWEEFQTRYNP 394
           H+F S+   +TK + P  +F+ +Y P
Sbjct: 54  HKFGSEMVNMTKNRLPHHKFEVKYEP 79


>SB_5851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 471 HEFESKRAQLTKKQTPWEEFQTRYNP 394
           H+F S+   +TK + P  +F+ +Y P
Sbjct: 81  HKFGSEMVNMTKNRLPHHKFEVKYEP 106


>SB_56082| Best HMM Match : PAP2 (HMM E-Value=0.0099)
          Length = 489

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 432 QTPWEEFQTRYNPSCLA 382
           QT WE+ Q  Y+P CL+
Sbjct: 44  QTTWEKIQIPYDPDCLS 60


>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
          Length = 1008

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 455 KGPS*LKSRPLGRNSKQGTTPLAWQCLPARRMQTVP 348
           +GP+    RP    +++GTTP  WQ  P+   Q  P
Sbjct: 297 QGPNVPGIRPGMDGAQRGTTPQGWQQAPSTTAQVRP 332


>SB_25512| Best HMM Match : PAP2 (HMM E-Value=2)
          Length = 231

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 432 QTPWEEFQTRYNPSCLA 382
           QT WE+ Q  Y+P CL+
Sbjct: 4   QTTWEKIQIPYDPDCLS 20


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,307,195
Number of Sequences: 59808
Number of extensions: 372578
Number of successful extensions: 981
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1197191618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)