Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30398
         (527 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    31   0.67 
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81475-3|CAB03909.1|  303|Caenorhabditis elegans Hypothetical pr...    27   6.3  
AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical ...    27   6.3  
AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical ...    27   6.3  
AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine r...    27   8.3  

>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 65  RNYDLGNGVLRFSKSKMFHKKAKYK 139
           RN+DL  GVLRFS S++  KK + K
Sbjct: 12  RNFDLSPGVLRFSASRLRLKKGEKK 36



 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +1

Query: 328 IRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLLFS*LGPFAFKFVP 474
           +R  L  GTV I+LAGRH   R  V  L+ LP+  L    GP      P
Sbjct: 67  LRKTLTPGTVLIVLAGRHKGKR--VVFLKQLPQSGLLLVTGPHKINGFP 113


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical protein
            F23D12.2 protein.
          Length = 1322

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 218  NGGTRTVPLKRRSPSTPLRRKSVLHLVAVHSASMYAGSDPT*R*ELFA 361
            NGGT+ + L +  P TP+   SV+  V V S  +     P    EL A
Sbjct: 975  NGGTKGMSLSQTLPQTPIALSSVVESVEVISCKVSTEISPAKADELVA 1022


>Z81475-3|CAB03909.1|  303|Caenorhabditis elegans Hypothetical
           protein C24H11.3 protein.
          Length = 303

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 235 STPQT*ESFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTV 357
           STP+  E FYP  E I   + GR    H+  I   L  G++
Sbjct: 15  STPEIWEEFYPKTEMIVTRNRGRVIFPHLDYIIKGLDPGSL 55


>AC024809-9|AAO12399.1|  700|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2b protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 7   QACCRTCRWLD*EKIYEKT*EL*SGQRSAAFLQIQDVPQE 126
           Q  C TC W+D E+ Y     L    R+   ++IQ+VP +
Sbjct: 360 QGACVTCSWVDCEETYHVCCAL----RAGMTVRIQEVPND 395


>AC024809-8|AAF59546.2|  741|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.2a protein.
          Length = 741

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 7   QACCRTCRWLD*EKIYEKT*EL*SGQRSAAFLQIQDVPQE 126
           Q  C TC W+D E+ Y     L    R+   ++IQ+VP +
Sbjct: 401 QGACVTCSWVDCEETYHVCCAL----RAGMTVRIQEVPND 436


>AL021447-2|CAA16273.2|  807|Caenorhabditis elegans Hypothetical
           protein F19B2.6 protein.
          Length = 807

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -3

Query: 477 AGHEFESKRAQLTKKQTPWEEFQTRYNPSCLAMSTSEENANSSYLQV 337
           A    + K+  L   +  WEE +  +N    + +++EEN  +++ QV
Sbjct: 562 ARKSLQKKKDDLKASRKSWEEVKINHNNILSSNNSNEENIKTAFDQV 608


>AF078157-16|AAG24082.1|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein89 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 353 LFAFSSLVDIARQEGLY---LVWNSSQGVCFLVNWALLLSN 466
           L+++ +++ IA    L+   ++WN S G    V W LLL N
Sbjct: 30  LYSYRAIMCIALPIELFTFHVIWNKSPGKIIPVRWPLLLFN 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,586,590
Number of Sequences: 27780
Number of extensions: 266343
Number of successful extensions: 586
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)