Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30398
         (527 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    31   0.48 
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    31   0.48 
At5g37410.1 68418.m04500 hypothetical protein contains Pfam PF04...    29   2.6  
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    28   3.4  
At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    28   4.5  
At1g34550.1 68414.m04294 expressed protein contains Pfam profile...    27   5.9  
At3g25470.1 68416.m03166 bacterial hemolysin-related similar to ...    27   7.8  
At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase fa...    27   7.8  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 26/72 (36%), Positives = 37/72 (51%)
 Frame = +1

Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLLF 438
           FYP ++ ++     R  +K  + +R ++  GTV I+LAGR    R  V  L+ L  GLL 
Sbjct: 64  FYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKR--VVFLKQLASGLLL 119

Query: 439 S*LGPFAFKFVP 474
              GPF    VP
Sbjct: 120 V-TGPFKINGVP 130


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 26/72 (36%), Positives = 37/72 (51%)
 Frame = +1

Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLLF 438
           FYP ++ ++     R  +K  + +R ++  GTV I+LAGR    R  V  L+ L  GLL 
Sbjct: 64  FYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKR--VVFLKQLASGLLL 119

Query: 439 S*LGPFAFKFVP 474
              GPF    VP
Sbjct: 120 V-TGPFKINGVP 130


>At5g37410.1 68418.m04500 hypothetical protein contains Pfam
           PF04510: Family of unknown function (DUF577);  common
           family comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
          Length = 615

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 21/93 (22%), Positives = 42/93 (45%)
 Frame = -3

Query: 507 SHSAEGIPALAGHEFESKRAQLTKKQTPWEEFQTRYNPSCLAMSTSEENANSSYLQVGSD 328
           S S E +  +  + F+ + ++  K      ++   YNP CLA+   +    SS   +   
Sbjct: 17  SESHEELAMIVDNLFKREDSEEYKTSRALYKYCVSYNPGCLAVKLLKLYQYSSNAVLRLR 76

Query: 327 PAYMLAEWTATR*STDFLLSGVEGLLRLRGTVL 229
             Y L+E      + +F LS ++ L  ++G ++
Sbjct: 77  SIYQLSETLTDLRNRNFKLS-LDSLYEIKGVLI 108


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 25/72 (34%), Positives = 36/72 (50%)
 Frame = +1

Query: 259 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHCQARGVVPCLEFLPRGLLF 438
           FYP ++ ++     R   K  + ++ ++  GTV I+LAGR    R  V  L+ L  GLL 
Sbjct: 64  FYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKR--VVFLKQLSSGLLL 119

Query: 439 S*LGPFAFKFVP 474
              GPF    VP
Sbjct: 120 V-TGPFKINGVP 130


>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 220 WGNQNSTPQT*ESFYPTQEKIRASSGGRPFSKHVRRIRP 336
           W N NS P   +++YP   +  A++   P+    R  RP
Sbjct: 319 WNNGNSIPNHAQNYYPNAARPGAATMRPPYGNVFRPYRP 357


>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616);
           expression supported by MPSS
          Length = 812

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 220 WGNQ--NSTPQT*ESFYPTQEKIRASSGGRPFSKHVRRIRPNLK 345
           W N+    TP+   SF  T +K+R  +  +PF+ H+ +IR   K
Sbjct: 684 WFNEVERFTPRDQLSFAYTYQKLRRMNPDKPFNLHMFKIRREAK 727


>At3g25470.1 68416.m03166 bacterial hemolysin-related similar to
           hemolysine GB:AAD36643 from [Thermotoga maritima],
           contains Pfam profile: PF01479 S4 domain
          Length = 301

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 448 PVN*KADPLGGIPNKVQPLLPGNVYQRGEC 359
           P+  ++  LG +     PLLPG   Q GEC
Sbjct: 9   PIALRSSLLGFLSKSHNPLLPGRWVQAGEC 38


>At1g26270.1 68414.m03205 phosphatidylinositol 3- and 4-kinase
           family protein similar to phosphatidylinositol 4-kinase
           type-II beta [Homo sapiens] GI:20159767; contains Pfam
           profile PF00454: Phosphatidylinositol 3- and 4-kinase
          Length = 630

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 222 GEPEQYPSNVGVLLPHSGENPCFIW--WPSIQQACTQD 329
           G+ E  P + G+ LP + E+P F W  WP      ++D
Sbjct: 333 GQVELVPIDHGLCLPETLEDPYFEWIHWPQASIPFSED 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,083,894
Number of Sequences: 28952
Number of extensions: 255439
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)