Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30395
(348 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 152 2e-38
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 25 2.5
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.4
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 3.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 4.4
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 4.4
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 25 4.4
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 24 5.9
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 24 7.8
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 24 7.8
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 24 7.8
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 24 7.8
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 24 7.8
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 152 bits (368), Expect = 2e-38
Identities = 64/84 (76%), Positives = 78/84 (92%)
Frame = +2
Query: 2 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 181
NDEV+K++PVQKQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS+
Sbjct: 76 NDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSI 135
Query: 182 LPVRRGYWGNKIGKPHTVPCKVTG 253
+P+RRGYWG +G PHTVP KV+G
Sbjct: 136 MPIRRGYWGTALGDPHTVPVKVSG 159
Score = 56.0 bits (129), Expect = 2e-09
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +1
Query: 235 PLQGHRQCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
P++ +CGSVTVRL+PAPRG G+V APV K+ LQ+AG
Sbjct: 154 PVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAG 191
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 25.4 bits (53), Expect = 2.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 181 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 47
+R LS + GSG L N+T+ +A+G T +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 3.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -3
Query: 226 WLSDLVTPVTSSNW*NRQLSKDNSASN 146
++S++VTP T++NW N S +S S+
Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 189 FEEVTGVTRSESHTPSLARSPAVWFCNSPADSCPSWYWN 305
FE V+RS S RS +SP + P ++WN
Sbjct: 266 FELERSVSRSYQSPASTPRSSVSSVSSSPPEDHPFFHWN 304
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 24.6 bits (51), Expect = 4.4
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -3
Query: 211 VTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFL 32
VTP +SS+ + ++ +A + A+ HT N +V C+ + C+FL
Sbjct: 255 VTPSSSSSSTSSEVPSSTAALALNAS-KASNHTSLNAGAIVGIVIGCVAFAVVMALCIFL 313
Query: 31 Y 29
Y
Sbjct: 314 Y 314
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 24.6 bits (51), Expect = 4.4
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
Frame = +3
Query: 60 HVSRHLL-PLATTTVILV-WV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 233
+V HL P T L W + + + + F +L L +FE + SE H P
Sbjct: 613 YVESHLNGPTERTAASLTNWYSTLLKNTQIRFRKILRFSETLNSRFENASDFVISEGHLP 672
Query: 234 SL 239
L
Sbjct: 673 DL 674
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 24.6 bits (51), Expect = 4.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 145 GSGDFLAALHTQTNMTVVVANGNKCLETCA 56
G+GD H +T T +V +K L+ CA
Sbjct: 117 GTGDARLLKHKETGKTRLVMRRDKTLKVCA 146
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 24.2 bits (50), Expect = 5.9
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 8 EVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG-AIILAKLSV 181
E+ +++PVQK AGQ F + D G + + A ++G I+LA+L V
Sbjct: 123 EIDQVIPVQKILNAGQNLWFNEIILFEDELADNGKSMFDVR--ARVVQGHLILLARLVV 179
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 23.8 bits (49), Expect = 7.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 320 TGANTIPVPRGAGISRTVTEPHCR 249
TG + I +P+G G+ ++TE R
Sbjct: 231 TGKSWISLPKGKGVKLSITEERDR 254
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 23.8 bits (49), Expect = 7.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 155 AIILAKLSVLPVRRGYWGNK 214
A+I KLS LP+R W N+
Sbjct: 243 ALITVKLSQLPLRSLLWANE 262
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 23.8 bits (49), Expect = 7.8
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Frame = +1
Query: 109 FGCEV-QQGSRHCHSRR 156
+GC V Q+ HCHS R
Sbjct: 554 YGCRVIQRAIEHCHSER 570
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 23.8 bits (49), Expect = 7.8
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -1
Query: 300 STTRGRNQPDCYRTTLPVTLQG-TVCGFPILLP 205
ST RG+ PD T+P+ + C F L P
Sbjct: 104 STRRGKRMPDALSKTIPIWIATLNKCVFERLRP 136
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 23.8 bits (49), Expect = 7.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 320 TGANTIPVPRGAGISRTVTEPHCR 249
TG + I +P+G G+ ++TE R
Sbjct: 231 TGKSWISLPKGKGVKLSITEERDR 254
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,547
Number of Sequences: 5004
Number of extensions: 33282
Number of successful extensions: 91
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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