Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30395
(348 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 168 1e-42
07_01_0756 + 5819367-5820038,5820847-5821005 165 8e-42
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 49 9e-07
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 5e-06
08_01_0312 + 2764744-2767390,2767632-2767990 31 0.25
07_03_0681 + 20659789-20659839,20660030-20660170,20661294-206613... 30 0.57
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 1.0
09_06_0198 - 21496692-21496991,21497111-21497258,21497341-214975... 29 1.0
08_02_1631 + 28381248-28381418,28382069-28382144,28382925-283829... 27 4.0
08_02_0675 + 19929932-19930005,19930116-19930222,19931604-199319... 27 4.0
08_02_1290 - 25927667-25928950 26 7.1
04_03_0443 + 15999984-16000895,16002402-16003025 26 7.1
02_05_1168 + 34651143-34651424,34651983-34652138,34652239-346523... 26 7.1
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 26 7.1
06_03_0593 + 22596372-22596384,22596856-22597037,22597119-225973... 26 9.3
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232... 26 9.3
04_04_0031 - 22289078-22289521,22289702-22289754,22289839-222900... 26 9.3
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 26 9.3
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 168 bits (408), Expect = 1e-42
Identities = 75/83 (90%), Positives = 81/83 (97%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLSV+
Sbjct: 87 DEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLSVV 146
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIG+PHTVPCKVTG
Sbjct: 147 PVRRGYWGNKIGQPHTVPCKVTG 169
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSVTVR++PAPRG+GIV A VPKK+LQ AG
Sbjct: 170 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAG 201
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 165 bits (401), Expect = 8e-42
Identities = 74/83 (89%), Positives = 80/83 (96%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLSV+
Sbjct: 90 DEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLSVV 149
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 150 PVRRGYWGNKIGKPHTVPCKVTG 172
Score = 55.6 bits (128), Expect = 1e-08
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSVTVR++PAPRG+GIV A VPKK+LQ AG
Sbjct: 173 KCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAG 204
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 49.2 bits (112), Expect = 9e-07
Identities = 30/59 (50%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Frame = +2
Query: 74 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIG-KPHTVPCKV 247
FV +GD + HI LGVKC+K AT + GAIILA + G I KPHTV CKV
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA---MFRCAEGATRETISRKPHTVSCKV 55
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 259 GSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
GSVTVR++ P G+ +V VPKK+L+ AG
Sbjct: 60 GSVTVRMMLPPMGSSVVATRVPKKVLKFAG 89
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 5e-06
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 2 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 181
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 182 LPV 190
+ V
Sbjct: 231 VTV 233
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 31.1 bits (67), Expect = 0.25
Identities = 27/78 (34%), Positives = 36/78 (46%)
Frame = +3
Query: 54 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 233
+ HV LLPLAT T +A +PLP ALLSL S L + T + + +
Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSLGDPAGALRSWTYAAAASA 56
Query: 234 SLARSPAVWFCNSPADSC 287
RS A +C P +C
Sbjct: 57 GATRSLAPPWCAWPGVAC 74
>07_03_0681 +
20659789-20659839,20660030-20660170,20661294-20661399,
20661625-20661806,20661888-20662113,20662198-20662624,
20662844-20663189,20663271-20663849
Length = 685
Score = 29.9 bits (64), Expect = 0.57
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -3
Query: 247 DLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 98
DL D ++ + + + W NR +++ + G G ALH TNM+
Sbjct: 354 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHHGALHWTTNMS 403
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 136 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 20
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>09_06_0198 -
21496692-21496991,21497111-21497258,21497341-21497578,
21497679-21497889,21497977-21498170,21498263-21498364,
21498525-21499879,21501193-21501494,21501600-21501750,
21501838-21502102,21502155-21502362,21502467-21502660,
21502749-21502850,21503481-21503680,21504010-21504846,
21505806-21506107,21506209-21506359,21506447-21506684,
21506764-21506971,21507078-21507271,21507322-21507462,
21513484-21514811,21515923-21516227,21516331-21516481,
21516570-21516807,21516881-21517088,21517197-21517366,
21517451-21517549,21517708-21519029,21521601-21521683
Length = 3314
Score = 29.1 bits (62), Expect = 1.0
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = -3
Query: 238 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANG 80
R VW++D TPVT+S+ LS NS++ D + TN+T A G
Sbjct: 105 RTVVWVADRGTPVTNSSSSAPTLSLTNSSNLVLSDADGGVRWTTNITDDAAGG 157
Score = 26.2 bits (55), Expect = 7.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -3
Query: 238 RDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMT 98
R VW++D TPVT+++ LS NS++ D + TN+T
Sbjct: 1805 RTVVWVADRGTPVTNTSSSAPTLSLTNSSNLVLSDADGRVRWSTNIT 1851
>08_02_1631 +
28381248-28381418,28382069-28382144,28382925-28382995,
28383375-28383460,28384359-28384423,28384727-28385067
Length = 269
Score = 27.1 bits (57), Expect = 4.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 312 KHNSSTTRGRNQPDCYRTTLPVTLQGTVCGFPILLP 205
+H+++ RGR+ C R PV+LQ T F + P
Sbjct: 190 RHDNALKRGRDTRKCRRCPPPVSLQMTPRCFTAIKP 225
>08_02_0675 +
19929932-19930005,19930116-19930222,19931604-19931986,
19932306-19932386,19933249-19933281
Length = 225
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +3
Query: 45 VPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCLFYQFEEVTGVTRS 218
VP + +SR L A I W + ++ F+ LSL+SC+++ E++ ++R+
Sbjct: 156 VPSAEIISRRL---ALFAFIAGWSIVTSAETGPTFQLALSLVSCIYFLNEKMKNLSRA 210
>08_02_1290 - 25927667-25928950
Length = 427
Score = 26.2 bits (55), Expect = 7.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 169 SKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 47
SKD + SGD L H+ + VA +CL L+G
Sbjct: 302 SKDGKSFANSGDLLVTPHSHSAAAAGVAITTRCLYPRRLAG 342
>04_03_0443 + 15999984-16000895,16002402-16003025
Length = 511
Score = 26.2 bits (55), Expect = 7.1
Identities = 19/63 (30%), Positives = 32/63 (50%)
Frame = -3
Query: 286 QESAGLLQNHTAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQT 107
+E A L+++ +A A V LS++VT + + + S SG++LAALH
Sbjct: 156 EEVARLMRDLSAAATAGAAVNLSEMVTRMVNDTVLRCSVG---SRCEHSGEYLAALHAVV 212
Query: 106 NMT 98
+T
Sbjct: 213 RLT 215
>02_05_1168 +
34651143-34651424,34651983-34652138,34652239-34652346,
34652778-34652888,34652985-34654421,34654598-34654852
Length = 782
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -2
Query: 137 RLPCCTSHPNQYDRCCRQWQQMP 69
+LP C + PN Y C R ++ P
Sbjct: 717 KLPSCNNQPNSYLACLRAVKKQP 739
>02_05_0101 -
25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +2
Query: 68 KAFVAIGDNNGHIGLGVKCSKEVATAIRGAII 163
K V D NGH L C E+A GA+I
Sbjct: 577 KVPVKDNDGNGHSSLREDCCLEIAALDHGAVI 608
>06_03_0593 +
22596372-22596384,22596856-22597037,22597119-22597344,
22597429-22597855,22598075-22598429,22598511-22599089
Length = 593
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 247 DLARDGVWLSDLVTPVTSSNW*NRQLSK---DNSASNGSGDFLAALHTQTNMT 98
DL D ++ + + + W NR +++ N G G ALH TNM+
Sbjct: 259 DLDEDNRGMAQIRDDLAGAMWNNRGMAEAGGGNGGHGGHGGHHGALHWTTNMS 311
>06_01_0320 -
2320317-2320336,2320791-2320902,2321092-2321236,
2321353-2321459,2321572-2321665,2321752-2321948,
2322311-2322382,2322504-2322618,2323060-2323176,
2323253-2323344,2323445-2323621,2323746-2323820,
2323911-2324051,2324671-2324859,2325298-2325363,
2325445-2325595,2325718-2325786,2326293-2326441,
2326526-2326657,2326756-2327081,2327167-2327203,
2327926-2327980,2328242-2328309,2328464-2328466
Length = 902
Score = 25.8 bits (54), Expect = 9.3
Identities = 10/44 (22%), Positives = 24/44 (54%)
Frame = +3
Query: 27 LYRNKHVPDSAHVSRHLLPLATTTVILVWV*SAARKSPLPFEAL 158
L + +P++A ++R LP + ++ +W ++ +P E+L
Sbjct: 741 LIDSNRIPEAALMARSYLPSKVSEIVAIWRNDLSKVNPKAAESL 784
>04_04_0031 -
22289078-22289521,22289702-22289754,22289839-22290092,
22290189-22290604,22290683-22290970
Length = 484
Score = 25.8 bits (54), Expect = 9.3
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 83 IGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKI---GKPHTVPCKVTG 253
IGD+ +G+G S E AI+LA L+ + W N++ GKPH P VTG
Sbjct: 111 IGDDETAVGVGTVGSSE-------AIMLAGLAF----KRKWQNRMKAEGKPHDKPNIVTG 159
Query: 254 SVV 262
+ V
Sbjct: 160 ANV 162
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 25.8 bits (54), Expect = 9.3
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -1
Query: 303 SSTTRGRNQPDCYRTT--LPVTLQGTVCGFPIL 211
SS N+PD +T LPV L+ VC FP L
Sbjct: 1516 SSPNDKTNEPDGATSTHVLPVELEQEVCSFPEL 1548
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,381,110
Number of Sequences: 37544
Number of extensions: 255653
Number of successful extensions: 801
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -