Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30395
(348 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.) 174 1e-44
SB_35877| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.26
SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11) 30 0.59
SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007) 29 0.78
SB_20635| Best HMM Match : rve (HMM E-Value=0.91) 29 1.0
SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_52533| Best HMM Match : rve (HMM E-Value=2) 29 1.0
SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7) 29 1.0
SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33) 29 1.0
SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17) 28 1.8
SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 1.8
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 27 3.2
SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40) 27 3.2
SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05) 27 3.2
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_20260| Best HMM Match : fn3 (HMM E-Value=0) 27 5.5
SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06) 27 5.5
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24) 27 5.5
SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.3
SB_42238| Best HMM Match : Trypsin (HMM E-Value=0) 26 7.3
SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_27219| Best HMM Match : Cad (HMM E-Value=4) 26 9.7
SB_8913| Best HMM Match : Linker_histone (HMM E-Value=0.61) 26 9.7
SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.7
>SB_4413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 174 bits (424), Expect = 1e-44
Identities = 80/83 (96%), Positives = 83/83 (100%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEVLKIMPVQKQTRAGQRTRFKAFVAIGD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 52 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVI 111
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 112 PVRRGYWGNKIGKPHTVPCKVTG 134
Score = 61.3 bits (142), Expect = 2e-10
Identities = 28/32 (87%), Positives = 29/32 (90%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGS VRLIPAPRGTGIV APVPKKLLQMAG
Sbjct: 135 KCGSTRVRLIPAPRGTGIVSAPVPKKLLQMAG 166
>SB_35877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 31.1 bits (67), Expect = 0.26
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +1
Query: 211 QDRKATHRPLQGHRQCGSVTVRLIPAPRGTGIVFAP 318
Q K RPL+ H QC S+ IP R + +AP
Sbjct: 25 QSLKPLERPLRAHFQCSSILDEFIPDARDKDVGWAP 60
>SB_54594| Best HMM Match : Ank (HMM E-Value=4.4e-11)
Length = 733
Score = 29.9 bits (64), Expect = 0.59
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 83 IGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLP-VRRGYWGNKIGKPHTVP 238
IGD+ G + V+ +K + G++ L+ P +RRG G++ KPH+ P
Sbjct: 137 IGDSGGIDTMDVR-NKATGSVAWGSVTKRPLTSTPDIRRGQTGSEFRKPHSEP 188
>SB_53780| Best HMM Match : RVT_1 (HMM E-Value=0.0007)
Length = 280
Score = 29.5 bits (63), Expect = 0.78
Identities = 19/44 (43%), Positives = 23/44 (52%)
Frame = -3
Query: 148 NGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL 17
N G LA + N+ +V NG K + C LS T L LY HDL
Sbjct: 108 NAYGKSLAEFYNSNNL--IVLNGVK--QGCMLSPTLLNLYVHDL 147
>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
Length = 748
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 2 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 115
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 155 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 192
>SB_5251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 945
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 2 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 115
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 811 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 848
>SB_54962| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 2 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 115
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 2008 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 2045
>SB_52533| Best HMM Match : rve (HMM E-Value=2)
Length = 212
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 2 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 115
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 95 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 132
>SB_25521| Best HMM Match : NLPC_P60 (HMM E-Value=5.7)
Length = 212
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 2 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 115
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 9 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 46
>SB_993| Best HMM Match : rve (HMM E-Value=2.7e-33)
Length = 735
Score = 29.1 bits (62), Expect = 1.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 2 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLG 115
N +LK++ + Q +A + F+ FVA + H G G
Sbjct: 532 NRSILKVLKIATQEKADMQREFRKFVAAYRSTPHTGTG 569
>SB_32523| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-17)
Length = 1130
Score = 28.3 bits (60), Expect = 1.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 52 TAHTFQGICCHWRQQRSYW 108
TA + ICCH +Q + +W
Sbjct: 486 TADQYDAICCHTQQSKKFW 504
>SB_32282| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 897
Score = 28.3 bits (60), Expect = 1.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 50 GQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 139
G++ + K F+A+G NGH+ C ++A
Sbjct: 356 GRKDKRKDFLALGLRNGHVEFRFSCGADIA 385
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 29 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 202
+Q+ TR +RT +NN ++ LG+ C + TA+ G +L+ + ++ G
Sbjct: 1460 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 1515
Query: 203 W 205
W
Sbjct: 1516 W 1516
>SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)
Length = 700
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 226 THRPLQGH--RQCGSVTVRLIPAP 291
TH+P+QGH QCGS+ L+ P
Sbjct: 588 THQPVQGHVCTQCGSLLSPLLDKP 611
>SB_17882| Best HMM Match : ShTK (HMM E-Value=1e-05)
Length = 387
Score = 27.5 bits (58), Expect = 3.2
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 29 VQKQTRAGQRTRFKAFVAIGDNNGHIGLGV--KCSKEVATAIRGAIILAKLSVLPVRRGY 202
+Q+ TR +RT +NN ++ LG+ C + TA+ G +L+ + ++ G
Sbjct: 274 IQENTRTSRRTDISYRQLQANNNKNLELGIWRHCGPAILTALSG----RRLACVKIQAGP 329
Query: 203 W 205
W
Sbjct: 330 W 330
>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2190
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 211 QDRKATHRPLQGHRQCGSVTVRLIP-APRGTGIVFAPV 321
Q + ATH L G + VR+IP + RG G+ PV
Sbjct: 709 QGKNATHTTLHGLDKYHYYCVRIIPFSRRGDGLAAGPV 746
>SB_20260| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1428
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = -2
Query: 137 RLPCCTSHPNQYDRCC---RQWQQM 72
R PC + HP Q++ C QW++M
Sbjct: 1277 RTPCPSHHPTQFEDTCHTVNQWKRM 1301
>SB_29298| Best HMM Match : GFO_IDH_MocA_C (HMM E-Value=2.3e-06)
Length = 805
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 40 NTCRTAHTFQGICCHWRQQRSYWFGCEVQQGSRHCHSR 153
N A + IC W++++ W C+ Q G R H++
Sbjct: 51 NASAEAQEAKNICIQWQRRKPEW--CKRQLGGRQRHAQ 86
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 26.6 bits (56), Expect = 5.5
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = +1
Query: 22 HACTETNTCRTAHT-FQGICCHWR-QQRSYWFGCEVQQGSRHCHSRRYYP-C*VVCFTSS 192
++C TN + H + G C S F C G+R CHS Y C V C ++S
Sbjct: 687 YSCNLTNGQKVCHRDWYGPFCDVNCNSNSSHFTCNKTTGARVCHSNWYGTYCDVYCNSNS 746
>SB_8063| Best HMM Match : Homeobox (HMM E-Value=8.5e-24)
Length = 963
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 177 DNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPA 46
D L+ IAP A SLL + P+++P A +AL ++ P+
Sbjct: 365 DALSLQIAPSANNALSLLKGAYDALSPMIAPSANDALSLLKAPS 408
>SB_53557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 26.2 bits (55), Expect = 7.3
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 175 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLI 5
++ + NS N D TNMT + + G CL + TC+ L DL NL+
Sbjct: 235 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLM 289
>SB_42238| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 657
Score = 26.2 bits (55), Expect = 7.3
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 175 QLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHDL*NLI 5
++ + NS N D TNMT + + G CL + TC+ L DL NL+
Sbjct: 519 RILRRNSQPNDQADVARLQSLITNMTEIYSTGKVCL-NITRNNTCMSL-DPDLGNLM 573
>SB_40246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 748
Score = 25.8 bits (54), Expect = 9.7
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -3
Query: 247 DLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTNMTV 95
D A G+ ++ T VTSS + + +++ G DF ++ N+T+
Sbjct: 317 DTAHSGINTTEETTSVTSSELGKPNVGNEVTSNTGGNDFQIENNSCVNITI 367
>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
Length = 297
Score = 25.8 bits (54), Expect = 9.7
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 33 RNKHVPDSAHVSRHLLPLATTTVI-LVWV*SAARKSPLPFEALLS 164
RN+ P + S HLL LA V+ +V+ RK + F LLS
Sbjct: 220 RNRSEPITVVFSAHLLGLAKVLVVFIVFAKIIKRKCDVSFNRLLS 264
>SB_8913| Best HMM Match : Linker_histone (HMM E-Value=0.61)
Length = 297
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 286 QESAGLLQNHTAGDLARDGVWLSDLV 209
+ SAG + H AG ++R G W+S+ +
Sbjct: 71 RNSAGWNRTHGAGKVSRAGRWVSEAI 96
>SB_4647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 25.8 bits (54), Expect = 9.7
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -1
Query: 150 RMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARV 40
R ++ T+ P P+ P S ++N LKR R PARV
Sbjct: 1346 RASLKTTPTSSVPSPLCPSSSSKSSNQLKRSR-PARV 1381
>SB_20452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -1
Query: 144 AVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVC 37
A SL P P+LSP + L RVR R C
Sbjct: 828 ATQESLTSIPTSPSSPILSPSPHSVLSRVRSGERKC 863
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,962
Number of Sequences: 59808
Number of extensions: 292654
Number of successful extensions: 883
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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