Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30395
(348 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml prot... 176 6e-45
U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal prot... 176 6e-45
U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal prot... 176 6e-45
AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p pro... 176 6e-45
AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA... 176 6e-45
AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2 pr... 29 2.1
AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon prot... 29 2.1
AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB... 29 2.1
AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA... 29 2.1
AE014297-963|AAF54394.4| 1173|Drosophila melanogaster CG9381-PC,... 28 2.8
AY071302-1|AAL48924.1| 302|Drosophila melanogaster RE33041p pro... 28 3.7
AY069833-1|AAL39978.1| 895|Drosophila melanogaster SD07911p pro... 28 3.7
AF068271-1|AAC19245.1| 893|Drosophila melanogaster mutL homolog... 28 3.7
AE014134-486|AAF51198.2| 302|Drosophila melanogaster CG2973-PA ... 28 3.7
AE013599-2050|AAF58142.1| 899|Drosophila melanogaster CG8169-PA... 28 3.7
BT029651-1|ABL75710.1| 96|Drosophila melanogaster IP17231p pro... 27 4.9
AJ242938-1|CAB62168.1| 880|Drosophila melanogaster homeoprotein... 27 4.9
AF181638-1|AAD55424.1| 880|Drosophila melanogaster BcDNA.GH0863... 27 4.9
AE013599-217|AAM70823.1| 880|Drosophila melanogaster CG3268-PA ... 27 4.9
>X69120-1|CAA48872.1| 267|Drosophila melanogaster ribosoaml protein
S2 protein.
Length = 267
Score = 176 bits (429), Expect = 6e-45
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 87 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVV 146
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 147 PVRRGYWGNKIGKPHTVPCKVTG 169
Score = 60.1 bits (139), Expect = 8e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSV+VRLIPAPRGTGIV APVP+KLL MAG
Sbjct: 170 KCGSVSVRLIPAPRGTGIVSAPVPRKLLTMAG 201
>U01335-1|AAA87053.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 176 bits (429), Expect = 6e-45
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 87 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVV 146
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 147 PVRRGYWGNKIGKPHTVPCKVTG 169
Score = 61.3 bits (142), Expect = 3e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSV+VRLIPAPRGTGIV APVPKKLL MAG
Sbjct: 170 KCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAG 201
>U01334-1|AAC34198.1| 267|Drosophila melanogaster ribosomal protein
S2 protein.
Length = 267
Score = 176 bits (429), Expect = 6e-45
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 87 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVV 146
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 147 PVRRGYWGNKIGKPHTVPCKVTG 169
Score = 61.3 bits (142), Expect = 3e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSV+VRLIPAPRGTGIV APVPKKLL MAG
Sbjct: 170 KCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAG 201
>AY094799-1|AAM11152.1| 267|Drosophila melanogaster LD24077p
protein.
Length = 267
Score = 176 bits (429), Expect = 6e-45
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 87 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVV 146
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 147 PVRRGYWGNKIGKPHTVPCKVTG 169
Score = 61.3 bits (142), Expect = 3e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSV+VRLIPAPRGTGIV APVPKKLL MAG
Sbjct: 170 KCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAG 201
>AE014134-1713|AAF52822.1| 267|Drosophila melanogaster CG5920-PA
protein.
Length = 267
Score = 176 bits (429), Expect = 6e-45
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 87 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVV 146
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 147 PVRRGYWGNKIGKPHTVPCKVTG 169
Score = 61.3 bits (142), Expect = 3e-10
Identities = 28/32 (87%), Positives = 30/32 (93%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSV+VRLIPAPRGTGIV APVPKKLL MAG
Sbjct: 170 KCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAG 201
>AF158179-1|AAD48780.1| 1711|Drosophila melanogaster Chiffon-2
protein.
Length = 1711
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 129 RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 233
RKSP + L+L+SC+ Q ++ T SE+ P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070
>AF158178-1|AAD48779.1| 1695|Drosophila melanogaster Chiffon protein.
Length = 1695
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 129 RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 233
RKSP + L+L+SC+ Q ++ T SE+ P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070
>AE014134-2711|AAG22437.1| 1695|Drosophila melanogaster CG5813-PB,
isoform B protein.
Length = 1695
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 129 RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 233
RKSP + L+L+SC+ Q ++ T SE+ P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070
>AE014134-2710|AAF53530.1| 1711|Drosophila melanogaster CG5813-PA,
isoform A protein.
Length = 1711
Score = 28.7 bits (61), Expect = 2.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 129 RKSPLPFEALLSLLSCLFYQFEEVTGVTRSESHTP 233
RKSP + L+L+SC+ Q ++ T SE+ P
Sbjct: 1036 RKSPREHASTLALVSCIIRQRQDSQSKTNSEAEEP 1070
>AE014297-963|AAF54394.4| 1173|Drosophila melanogaster CG9381-PC,
isoform C protein.
Length = 1173
Score = 28.3 bits (60), Expect = 2.8
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Frame = -3
Query: 313 QTQFQYHEGQESAGLLQNHTAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGS-- 140
Q Q Q + Q+ G ++ G+ + +WL + + N N + +N +N +
Sbjct: 52 QQQQQQQQQQQQQGQQRSSNNGN---NNLWLGNSPWCNVNLNGGNSGNNNNNGGNNNNNN 108
Query: 139 GDFLAALHTQTNMTVVVANGNKCLETCALSGTCLF 35
G +++ + N+ AN N ++T SGTC++
Sbjct: 109 GGNISSNNNSNNVNNKDANPNCDVQTSNSSGTCIY 143
>AY071302-1|AAL48924.1| 302|Drosophila melanogaster RE33041p
protein.
Length = 302
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 223 LSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTN 104
L+ L T N+ ++ NSAS+ DFL+ HT +N
Sbjct: 11 LALLATSQAEYNYNEKEAKAANSASSSGEDFLSDYHTPSN 50
>AY069833-1|AAL39978.1| 895|Drosophila melanogaster SD07911p
protein.
Length = 895
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 89 DNNGHIGLGVKCSKEVATAIRGAIILAKL-SVLPVRRGYWGNKIGKPHTVPCKVTGSVVL 265
D+ G I C++ V T + +LA L S LPVRR + I K T C++ + L
Sbjct: 150 DHEGRIKKRSPCARGVGTTV----LLANLFSTLPVRRRDFTRNIKKEFTKMCQILQAYCL 205
Query: 266 *QSG 277
G
Sbjct: 206 VTKG 209
>AF068271-1|AAC19245.1| 893|Drosophila melanogaster mutL homolog
PMS2 protein.
Length = 893
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 89 DNNGHIGLGVKCSKEVATAIRGAIILAKL-SVLPVRRGYWGNKIGKPHTVPCKVTGSVVL 265
D+ G I C++ V T + +LA L S LPVRR + I K T C++ + L
Sbjct: 149 DHEGRIKKRSPCARGVGTTV----LLANLFSTLPVRRRDFTRNIKKEFTKMCQILQAYCL 204
Query: 266 *QSG 277
G
Sbjct: 205 VTKG 208
>AE014134-486|AAF51198.2| 302|Drosophila melanogaster CG2973-PA
protein.
Length = 302
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 223 LSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQTN 104
L+ L T N+ ++ NSAS+ DFL+ HT +N
Sbjct: 11 LALLATSQAEYNYNEKEAKAANSASSSGEDFLSDYHTPSN 50
>AE013599-2050|AAF58142.1| 899|Drosophila melanogaster CG8169-PA
protein.
Length = 899
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 89 DNNGHIGLGVKCSKEVATAIRGAIILAKL-SVLPVRRGYWGNKIGKPHTVPCKVTGSVVL 265
D+ G I C++ V T + +LA L S LPVRR + I K T C++ + L
Sbjct: 150 DHEGRIKKRSPCARGVGTTV----LLANLFSTLPVRRRDFTRNIKKEFTKMCQILQAYCL 205
Query: 266 *QSG 277
G
Sbjct: 206 VTKG 209
>BT029651-1|ABL75710.1| 96|Drosophila melanogaster IP17231p
protein.
Length = 96
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 104 IGLGVKCSKEVATAIRGAI---ILAKLSVLPVRRGYWGNKI 217
IG+ C K V A + A+ ILAK +P R G G KI
Sbjct: 31 IGINFLCGKTVRKAGKYAVPIGILAKCICMPARNGRSGEKI 71
>AJ242938-1|CAB62168.1| 880|Drosophila melanogaster homeoprotein
phtf protein.
Length = 880
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 168 ARIIAPRMAVATSLLHFTPKPI*PLLSPMATNA 70
+ I P ATS + P+P+ PL SP T A
Sbjct: 238 SNISLPNRRTATSTIEVLPRPVTPLPSPTVTCA 270
>AF181638-1|AAD55424.1| 880|Drosophila melanogaster BcDNA.GH08636
protein.
Length = 880
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 168 ARIIAPRMAVATSLLHFTPKPI*PLLSPMATNA 70
+ I P ATS + P+P+ PL SP T A
Sbjct: 238 SNISLPNRRTATSTIEVLPRPVTPLPSPTVTCA 270
>AE013599-217|AAM70823.1| 880|Drosophila melanogaster CG3268-PA
protein.
Length = 880
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 168 ARIIAPRMAVATSLLHFTPKPI*PLLSPMATNA 70
+ I P ATS + P+P+ PL SP T A
Sbjct: 238 SNISLPNRRTATSTIEVLPRPVTPLPSPTVTCA 270
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,903,186
Number of Sequences: 53049
Number of extensions: 425303
Number of successful extensions: 1223
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 24,988,368
effective HSP length: 76
effective length of database: 20,956,644
effective search space used: 817309116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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