Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30395
(348 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 159 4e-40
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 1.2
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 1.6
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 1.6
AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical ... 27 2.8
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr... 26 6.4
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 26 8.5
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 26 8.5
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 26 8.5
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 26 8.5
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 159 bits (387), Expect = 4e-40
Identities = 73/83 (87%), Positives = 78/83 (93%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL+V+
Sbjct: 100 DEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVV 159
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIG PHTVPCKVTG
Sbjct: 160 PVRRGYWGNKIGLPHTVPCKVTG 182
Score = 58.4 bits (135), Expect = 1e-09
Identities = 27/32 (84%), Positives = 28/32 (87%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+C SV VRLIPAPRGTGIV APVPKKLL MAG
Sbjct: 183 KCASVMVRLIPAPRGTGIVSAPVPKKLLHMAG 214
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 199 TSSNW*NRQLSKDNSASNGSG 137
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 13 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 156
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 13 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 156
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AC006794-1|AAK68504.1| 407|Caenorhabditis elegans Hypothetical
protein Y50D4A.3 protein.
Length = 407
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 119 KCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKV 247
+CS E T G ++ GY+G+ +G HT+ CK+
Sbjct: 284 ECSGEDPTNPGGPGESRRIKAFKWFNGYFGSPVGPEHTLSCKM 326
>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical protein
R10E11.1b protein.
Length = 2056
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 174 CLFYQFEEVTGVTRSESHTPSLARSPAVWFCNSPAD 281
CL Y E ++ +T + SPAVW C S D
Sbjct: 1482 CLAYSLHETD--SKGMEYTCNKCSSPAVWHCQSCDD 1515
>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical protein
R10E11.1a protein.
Length = 2045
Score = 26.2 bits (55), Expect = 6.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 174 CLFYQFEEVTGVTRSESHTPSLARSPAVWFCNSPAD 281
CL Y E ++ +T + SPAVW C S D
Sbjct: 1471 CLAYSLHETD--SKGMEYTCNKCSSPAVWHCQSCDD 1504
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 79 NKCLETCALSGTCLFLYR-HDL*NLII 2
++CLE C +S C F Y+ D+ N +I
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLI 312
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -3
Query: 79 NKCLETCALSGTCLFLYR-HDL*NLII 2
++CLE C +S C F Y+ D+ N +I
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLI 312
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 283 ESAGLLQNHTAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQT 107
+S L++ T+G G + + +P SS+ + Q S +AS SG+ + TQT
Sbjct: 519 QSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQT 577
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 283 ESAGLLQNHTAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQT 107
+S L++ T+G G + + +P SS+ + Q S +AS SG+ + TQT
Sbjct: 726 QSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQT 784
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -3
Query: 283 ESAGLLQNHTAGDLARDGVWLSDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAALHTQT 107
+S L++ T+G G + + +P SS+ + Q S +AS SG+ + TQT
Sbjct: 726 QSTSSLESSTSGATTSSGSAGTTMTSPSQSSSVGSSQGSTSPAASTTSGEMTSQGSTQT 784
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,349,220
Number of Sequences: 27780
Number of extensions: 203818
Number of successful extensions: 718
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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