Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30395
         (348 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   1.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.3  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    20   9.6  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 232 RPLQGHRQCGSVTVRLIP 285
           RP+  H+   +VT++L+P
Sbjct: 60  RPISSHQIANNVTMQLLP 77


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 96  TVILVWV*SAARKSPL 143
           T++LVW  SAA  SP+
Sbjct: 306 TILLVWAISAAIGSPI 321


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/31 (29%), Positives = 11/31 (35%)
 Frame = +3

Query: 207  VTRSESHTPSLARSPAVWFCNSPADSCPSWY 299
            +T    H     R  A   CN+  D    WY
Sbjct: 1316 ITSFGGHVVRPWRGSATLACNAVGDPTREWY 1346


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 9/31 (29%), Positives = 11/31 (35%)
 Frame = +3

Query: 207  VTRSESHTPSLARSPAVWFCNSPADSCPSWY 299
            +T    H     R  A   CN+  D    WY
Sbjct: 1312 ITSFGGHVVRPWRGSATLACNAVGDPTREWY 1342


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 61  TFQGICCHWRQQRSYWF 111
           T+Q + CH++Q    +F
Sbjct: 125 TYQYVQCHYKQNPEKFF 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,896
Number of Sequences: 438
Number of extensions: 2551
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)