Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30395
(348 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 171 1e-43
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 171 1e-43
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 171 1e-43
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 171 1e-43
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 171 1e-43
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 170 2e-43
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 3e-06
At5g66310.1 68418.m08360 kinesin motor family protein contains P... 33 0.069
At1g73130.1 68414.m08456 expressed protein 30 0.49
At3g01450.1 68416.m00069 expressed protein 29 1.1
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 1.5
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 28 2.0
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ... 27 3.4
At3g59390.2 68416.m06624 expressed protein protein CG15643 - Dro... 27 4.5
At3g59390.1 68416.m06623 expressed protein protein CG15643 - Dro... 27 4.5
At1g78200.2 68414.m09113 protein phosphatase 2C, putative / PP2C... 27 4.5
At1g78200.1 68414.m09112 protein phosphatase 2C, putative / PP2C... 27 4.5
At2g34060.1 68415.m04170 peroxidase, putative similar to peroxid... 26 7.9
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 171 bits (415), Expect = 1e-43
Identities = 77/83 (92%), Positives = 81/83 (97%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 98 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 157
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 158 PVRRGYWGNKIGKPHTVPCKVTG 180
Score = 55.6 bits (128), Expect = 9e-09
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSVTVR++PAPRG+GIV A VPKK+LQ AG
Sbjct: 181 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAG 212
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 171 bits (415), Expect = 1e-43
Identities = 77/83 (92%), Positives = 81/83 (97%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTG 179
Score = 55.6 bits (128), Expect = 9e-09
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSVTVR++PAPRG+GIV A VPKK+LQ AG
Sbjct: 180 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAG 211
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 171 bits (415), Expect = 1e-43
Identities = 77/83 (92%), Positives = 81/83 (97%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTG 179
Score = 55.6 bits (128), Expect = 9e-09
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSVTVR++PAPRG+GIV A VPKK+LQ AG
Sbjct: 180 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAG 211
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 171 bits (415), Expect = 1e-43
Identities = 77/83 (92%), Positives = 81/83 (97%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTG 179
Score = 55.6 bits (128), Expect = 9e-09
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSVTVR++PAPRG+GIV A VPKK+LQ AG
Sbjct: 180 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAG 211
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 171 bits (415), Expect = 1e-43
Identities = 77/83 (92%), Positives = 81/83 (97%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 97 DEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVV 156
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
PVRRGYWGNKIGKPHTVPCKVTG
Sbjct: 157 PVRRGYWGNKIGKPHTVPCKVTG 179
Score = 55.6 bits (128), Expect = 9e-09
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSVTVR++PAPRG+GIV A VPKK+LQ AG
Sbjct: 180 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAG 211
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 170 bits (414), Expect = 2e-43
Identities = 75/83 (90%), Positives = 82/83 (98%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+
Sbjct: 89 DEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVV 148
Query: 185 PVRRGYWGNKIGKPHTVPCKVTG 253
P+RRGYWGNKIGKPHTVPCKVTG
Sbjct: 149 PIRRGYWGNKIGKPHTVPCKVTG 171
Score = 55.6 bits (128), Expect = 9e-09
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = +1
Query: 253 QCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
+CGSVTVR++PAPRG+GIV A VPKK+LQ AG
Sbjct: 172 KCGSVTVRMVPAPRGSGIVAARVPKKVLQFAG 203
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 3e-06
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +2
Query: 5 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 184
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 185 PV 190
V
Sbjct: 209 QV 210
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +1
Query: 235 PLQGHRQCGSVTVRLIPAPRGTGIVFAPVPKKLLQMAG 348
P + G+ V L PA GTG++ + +L+MAG
Sbjct: 219 PHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAG 256
>At5g66310.1 68418.m08360 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1063
Score = 32.7 bits (71), Expect = 0.069
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 207 VTRSESHTPSLARSPAVWFCNSPADSCPSWY 299
+TRS S PSL SP+ + AD+ PSWY
Sbjct: 715 LTRSRSCRPSLLSSPSSSWLEKDADTPPSWY 745
>At1g73130.1 68414.m08456 expressed protein
Length = 646
Score = 29.9 bits (64), Expect = 0.49
Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 207 VTRSESH-TPSLARSPAVWFCNSPADSCP 290
VT ESH T SL+ SP+ CNSP+DS P
Sbjct: 196 VTDKESHITKSLSNSPS---CNSPSDSPP 221
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = -1
Query: 234 TVCGFPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVR 55
T+ +LL Q L++ + A + VA + H +P + P L P N R+R
Sbjct: 159 TIDQLDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIR 217
Query: 54 CPARVCF 34
A CF
Sbjct: 218 AKASTCF 224
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 1.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 71 AFVAIGDNNGHIGLGVKCSKE 133
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -1
Query: 213 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 34
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
(UBP16) similar to ubiquitin-specific protease 16
GI:11993477 [Arabidopsis thaliana]
Length = 1008
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -3
Query: 220 SDLVTPVTSSNW*NRQLSKDNSASNGSGDFLAAL 119
+D ++P+ SSN + L K SAS+ +G LA L
Sbjct: 404 TDALSPLDSSNLSHVTLPKSKSASSENGSMLAPL 437
>At3g59390.2 68416.m06624 expressed protein protein CG15643 -
Drosophila melanogaster, EMBL:AE003499
Length = 273
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 76 CCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLL 204
CC W+ +R GC + S+ C+S Y C C S+ LL
Sbjct: 69 CCPWKGERFSCHGCNIL--SQCCNS--YEFCVSCCLNPSQTLL 107
>At3g59390.1 68416.m06623 expressed protein protein CG15643 -
Drosophila melanogaster, EMBL:AE003499
Length = 273
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 76 CCHWRQQRSYWFGCEVQQGSRHCHSRRYYPC*VVCFTSSKRLL 204
CC W+ +R GC + S+ C+S Y C C S+ LL
Sbjct: 69 CCPWKGERFSCHGCNIL--SQCCNS--YEFCVSCCLNPSQTLL 107
>At1g78200.2 68414.m09113 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase 2C GB:CAA72341
[Medicago sativa]; contains Pfam profile: PF00481
Protein phosphatase 2C
Length = 283
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 304 FQYHEGQESAGLLQNHTAGDLARDGVWLSD 215
F H+G A LQ H ++ +DG +L D
Sbjct: 68 FDGHKGDHVAAYLQKHLFSNILKDGEFLVD 97
>At1g78200.1 68414.m09112 protein phosphatase 2C, putative / PP2C,
putative similar to protein phosphatase 2C GB:CAA72341
[Medicago sativa]; contains Pfam profile: PF00481
Protein phosphatase 2C
Length = 283
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 304 FQYHEGQESAGLLQNHTAGDLARDGVWLSD 215
F H+G A LQ H ++ +DG +L D
Sbjct: 68 FDGHKGDHVAAYLQKHLFSNILKDGEFLVD 97
>At2g34060.1 68415.m04170 peroxidase, putative similar to peroxidase
ATP20a {Arabidopsis thaliana} GP|9757794|dbj|BAB08292
Length = 346
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +2
Query: 116 VKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKPHTVPCKVTGS 256
V CS +A A R I LA V++G W K VP + S
Sbjct: 138 VSCSDILAIAARDFIHLAGGPYYQVKKGRWDGKRSTAKNVPPNIPRS 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,835,875
Number of Sequences: 28952
Number of extensions: 190430
Number of successful extensions: 569
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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