Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30394
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0664 + 24122958-24123070,24123184-24123261,24125040-241252... 102 2e-22
12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006 55 5e-08
05_01_0043 - 295041-295173,296252-296537,296616-296697 55 5e-08
02_04_0181 - 20705307-20705439,20705991-20706037,20706181-207062... 55 5e-08
11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538 55 6e-08
01_07_0267 + 42410174-42410252,42410679-42411097 54 1e-07
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198... 36 0.031
08_02_0319 - 15742524-15742567,15742691-15742825,15742922-157430... 32 0.38
01_06_1023 + 33890733-33891034,33891171-33891258,33894253-338945... 32 0.50
11_04_0238 - 15234121-15234189,15234253-15234351,15234438-15234857 31 0.67
10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043... 31 0.88
06_03_0377 - 20068716-20069190,20069205-20069413 31 1.2
03_01_0027 - 250837-250877,250972-252909,253733-253805,254476-25... 31 1.2
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 31 1.2
01_02_0040 - 10496431-10496463,10497278-10498708 30 2.0
03_05_0473 - 24670411-24671259 29 2.7
11_01_0559 - 4406815-4406922,4408954-4409042,4409177-4409270,440... 29 3.5
10_08_0288 + 16527666-16527837,16527915-16528132,16528491-165285... 29 3.5
03_02_0721 - 10677286-10678018,10679293-10679373,10682516-106826... 29 3.5
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 29 3.5
09_02_0030 + 3115502-3115750,3115835-3116104,3116193-3116633,311... 29 4.7
05_01_0323 - 2545281-2545784 29 4.7
04_03_0397 - 15362353-15363383,15385301-15385910,15386890-153870... 29 4.7
11_01_0716 + 5900598-5901167 28 6.2
06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881 28 6.2
03_05_0819 + 27948797-27948956,27948976-27949202 28 6.2
02_02_0335 + 9063749-9064216,9064846-9064890,9065351-9065470,906... 28 6.2
07_03_0877 - 22240266-22241109,22241238-22241367,22241483-22241615 28 8.2
03_05_0303 - 22939513-22939598,22940065-22940194,22940753-22941073 28 8.2
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34... 28 8.2
>01_05_0664 +
24122958-24123070,24123184-24123261,24125040-24125210,
24125288-24125456
Length = 176
Score = 102 bits (245), Expect = 2e-22
Identities = 65/148 (43%), Positives = 91/148 (61%)
Frame = +3
Query: 249 PVMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGL 428
P + +GIA S+ +SV+GAA GI TG S++G +KAPRI +KNLISVIFCEAVAIYG+
Sbjct: 17 PYTFSAIGIAVSIGVSVLGAAWGIFITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGV 76
Query: 429 ITAIVLSGMLEKYSEPFTSVSVKQQN*WRDT*CSALDSLLAW*NLFCGNLLLGIVGLWCC 608
I AI+L LE S P T++ ++ A ++ + NL CG + +GI+G C
Sbjct: 77 IVAIILQTKLE--SVP-TALVHHPESLRAGYAIFASGLIVGFANLVCG-VCVGIIGSSCA 132
Query: 609 SNGCCQTLPWFVKILIG*KFLGSSIGSF 692
+ Q FVKIL+ + GS++G F
Sbjct: 133 LSD-AQNSSLFVKILV-IEIFGSALGLF 158
>12_01_0443 - 3498848-3498980,3500504-3500789,3500928-3501006
Length = 165
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/81 (30%), Positives = 45/81 (55%)
Frame = +3
Query: 237 GEHFPVMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 416
G+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 7 GDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66
Query: 417 IYGLITAIVLSGMLEKYSEPF 479
IYGLI A+++S + ++P+
Sbjct: 67 IYGLIIAVIISTGINPKAKPY 87
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +3
Query: 270 GIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLS 449
G+A +A G A+GI G + V + P++ ++ +IF EA+A+YGLI I+LS
Sbjct: 99 GLACGLAGLAAGMAIGI--VGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILS 156
>05_01_0043 - 295041-295173,296252-296537,296616-296697
Length = 166
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/81 (30%), Positives = 45/81 (55%)
Frame = +3
Query: 237 GEHFPVMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 416
G+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 8 GDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 67
Query: 417 IYGLITAIVLSGMLEKYSEPF 479
IYGLI A+++S + ++P+
Sbjct: 68 IYGLIIAVIISTGINPKAKPY 88
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +3
Query: 270 GIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLS 449
G+A +A G A+GI G + V + P++ ++ +IF EA+A+YGLI I+LS
Sbjct: 100 GLACGLAGLAAGMAIGI--VGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILS 157
>02_04_0181 -
20705307-20705439,20705991-20706037,20706181-20706229,
20706685-20707055
Length = 199
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/81 (30%), Positives = 45/81 (55%)
Frame = +3
Query: 237 GEHFPVMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 416
G+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 9 GDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 68
Query: 417 IYGLITAIVLSGMLEKYSEPF 479
IYGLI A+++S + ++P+
Sbjct: 69 IYGLIIAVIISTGINPKAKPY 89
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 363 PRIKTKNLISVIFCEAVAIYGLITAIVLS 449
P++ ++ +IF EA+A+YGLI I+LS
Sbjct: 162 PKLFVGMILILIFAEALALYGLIVGIILS 190
>11_01_0440 - 3358786-3358918,3359861-3360146,3360460-3360538
Length = 165
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/81 (30%), Positives = 45/81 (55%)
Frame = +3
Query: 237 GEHFPVMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 416
G+ +G LG A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 7 GDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLG 66
Query: 417 IYGLITAIVLSGMLEKYSEPF 479
IYGLI A+++S + ++P+
Sbjct: 67 IYGLIIAVIISTGINPKAKPY 87
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +3
Query: 270 GIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVLS 449
G+A +A G A+GI G + V + P++ ++ +IF EA+A+YGLI I+LS
Sbjct: 99 GLACGLAGLAAGMAIGI--VGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILS 156
>01_07_0267 + 42410174-42410252,42410679-42411097
Length = 165
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/81 (29%), Positives = 44/81 (54%)
Frame = +3
Query: 237 GEHFPVMWGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVA 416
G+ F G +G A ++ S +GAA G +GV + GV P + K+++ V+ +
Sbjct: 7 GDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVMAGVLG 66
Query: 417 IYGLITAIVLSGMLEKYSEPF 479
IYGLI A++++ + + P+
Sbjct: 67 IYGLIIAVIITTGINPTAMPY 87
>02_01_0297 +
1986422-1986570,1986960-1987065,1987188-1987464,
1987805-1988305,1989010-1990016,1990131-1990781,
1991337-1991633,1991735-1992013,1993070-1993198,
1993291-1993491,1993651-1993793,1993878-1994190,
1994349-1994488,1995320-1995398,1995484-1995753,
1996208-1996425,1996521-1996632
Length = 1623
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -3
Query: 667 NFQPMRILTNQGSVWQHPLEQHQSPTIPNSKFPQNRFHQANSESSAEHHVS 515
NFQ ++ Q QH ++QHQ P+S+F QN++H + +++H S
Sbjct: 414 NFQSSQLTHEQLIRQQHSMQQHQMQ--PSSQFVQNQYHLNQQQPNSQHQQS 462
>08_02_0319 -
15742524-15742567,15742691-15742825,15742922-15743020,
15746200-15746325,15746639-15746728,15746860-15746875
Length = 169
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -2
Query: 347 SHYADTSSV-DAHGCSDN---GQGNGKGDSEGTPHYGEVFSKNHPKLICSPF 204
SHY T+S+ A GC G N K + +GT +YG + +N+ + S +
Sbjct: 57 SHYIYTTSIGQAGGCHKGKVKGYSNSKPNQQGTTNYGNSYKENNAQSAASSY 108
>01_06_1023 +
33890733-33891034,33891171-33891258,33894253-33894522,
33894616-33894724,33894833-33894950,33895051-33895183,
33895306-33895493,33895566-33895752,33895797-33895841,
33895850-33895917,33896093-33896186,33896284-33896475,
33896656-33896736,33897363-33897425
Length = 645
Score = 31.9 bits (69), Expect = 0.50
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 256 CGVPSESPFPLPCPLSEQPWAS 321
CGVP ES FP+P ++PW S
Sbjct: 421 CGVPYESYFPMPASGRDKPWYS 442
>11_04_0238 - 15234121-15234189,15234253-15234351,15234438-15234857
Length = 195
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = -2
Query: 536 QRRTSRIPPSVLLLDGHTSKWFRIFLQHTREHDSSDQTVNGDGLAEDDGDQILSLDSRCF 357
+ + S P+V ++ + +R+FL++ R H++ D + DG G + + D C
Sbjct: 43 KEKGSSTVPAVYDVNADIEEEYRLFLENVRVHENEDFVLEYDGKVIRYGGEEMDDDDSCI 102
Query: 356 DTS 348
+ S
Sbjct: 103 EVS 105
>10_07_0063 -
12502305-12503361,12503567-12503668,12504251-12504378,
12504653-12504764,12504876-12504927,12505260-12505517,
12505943-12506079,12506296-12506606
Length = 718
Score = 31.1 bits (67), Expect = 0.88
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = -3
Query: 694 QKDPMEDPKNFQPMRILTNQGSVWQHPLEQHQSPTIPNSKFPQNRFHQANSESSAEHHVS 515
Q+ + PK+ +P I + Q+P QH + +P Q + + S+A +
Sbjct: 447 QQQQQQPPKSIKPAPIQQSSAYPQQYPKHQHHNQALPRVPPSQEQRAAVSQTSAARQDFT 506
Query: 514 RHQ 506
HQ
Sbjct: 507 NHQ 509
>06_03_0377 - 20068716-20069190,20069205-20069413
Length = 227
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 500 LLDGHTSKWFRIFLQHTREHDSSDQTVNGDGLAEDDGDQI 381
++ G+TS W + E DS T G+G AE +GD++
Sbjct: 45 MMTGNTSSWQE---RRPEEGDSDGVTFQGEGAAEGEGDEV 81
>03_01_0027 -
250837-250877,250972-252909,253733-253805,254476-254555,
255336-255595,255721-255785,256747-256839
Length = 849
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 688 DPMEDPKNFQPMRILTNQGSVWQHPLEQHQSPTIPNSKFPQNRFHQANSESSAE 527
D P P R++TNQG W H Q TI + PQ+ + + +S +
Sbjct: 209 DMTNPPPRILP-RVMTNQGRHWCHESNTDQLQTIIKTSLPQHLNYATDMDSKVK 261
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/74 (31%), Positives = 32/74 (43%)
Frame = -2
Query: 485 TSKWFRIFLQHTREHDSSDQTVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGC 306
TSK RI E + V+ D D+ + + S + Y SS D+ G
Sbjct: 4 TSKCNRISRVADEEEEEEIVAVSSDA---DESESESEVGSGAEEEDDDYVGESS-DSAGG 59
Query: 305 SDNGQGNGKGDSEG 264
S +G G+G GD EG
Sbjct: 60 SGSGSGDGDGDEEG 73
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = -2
Query: 440 DSSDQTVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKG 276
+S ++ G G E+D D + + S D + G SD G G G+G
Sbjct: 31 ESESESEVGSGAEEEDDDYVGESSDSAGGSGSGSGDGDGDEEGGRSDIGDGEGEG 85
>01_02_0040 - 10496431-10496463,10497278-10498708
Length = 487
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 335 DTSSVDAHGCSDNGQGNGKGDSEG 264
D ++ A G ++NG GNGKG+ G
Sbjct: 9 DAAAAAAAGAAENGYGNGKGNGNG 32
>03_05_0473 - 24670411-24671259
Length = 282
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 653 EDLDEPRQRLAASVRAAPEPHDTQQQIPTE 564
+D+DEP AA V AAP P Q+P E
Sbjct: 77 DDVDEPALLAAAVVPAAPPPAAGDDQLPAE 106
>11_01_0559 -
4406815-4406922,4408954-4409042,4409177-4409270,
4409344-4409481,4409570-4409727,4409826-4409916,
4410003-4411637
Length = 770
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = -2
Query: 452 TREHDSSDQ----TVNGDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQG 288
TREHD + V+GD AE+DGD+ + S D D + SD+ +G
Sbjct: 2 TREHDGDGEEVATAVHGDAGAEEDGDRNVVDKSEFSDAVHVVVDRDDEEPEFPSDDDEG 60
>10_08_0288 +
16527666-16527837,16527915-16528132,16528491-16528554,
16528749-16528821,16529294-16529371,16529573-16529730,
16530222-16530390,16530531-16530990,16531098-16531478,
16531834-16532037,16532318-16532451,16532937-16533120
Length = 764
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Frame = -2
Query: 548 QQRVQRRTSRIPPSVLLLDGHTSKWFRIFLQHTREH------DSSDQTVNGDGLAEDDGD 387
++ V + + L DG+T W R FL TR + D D ++ D L +DD +
Sbjct: 462 EEEVDEELDELISRIKLEDGNTEFWKRRFLGETRNYLCEEVNDEEDADLDDDELDDDDDE 521
>03_02_0721 -
10677286-10678018,10679293-10679373,10682516-10682645,
10682969-10683101
Length = 358
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 227 DGSWRTLPRNVGYPRNRLFRCPVRCR 304
+GSWR+LP+N G L RC CR
Sbjct: 34 EGSWRSLPKNAG-----LLRCGKSCR 54
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -2
Query: 458 QHTREHDSSDQTVNGDGLAEDDGD-----QILSLDSRCFDTSSHYADTSSVDAHGCSDNG 294
++++E D ++Q+ +G A+D D + L +S S A + GCS+
Sbjct: 118 ENSKEIDGNNQSQEANGEADDINDVSANSENLKQESIANSVESDKAPEELKEVSGCSEEL 177
Query: 293 QGNGKGDSEG 264
+ GDSEG
Sbjct: 178 LNDENGDSEG 187
>09_02_0030 +
3115502-3115750,3115835-3116104,3116193-3116633,
3116697-3116783,3116872-3116973,3117532-3117631,
3117791-3117807
Length = 421
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -2
Query: 653 EDLDEPRQRLAASVRAAPEPHDTQQQIPTE*ISPSQQRVQRRTSRIPPS 507
E L R R+ A PEP QQ+ E ++ SQ + R+ IP S
Sbjct: 36 EKLLNNRSRILAFRNKPPEPEGIVQQLLYETLTSSQTKPARKCRHIPQS 84
>05_01_0323 - 2545281-2545784
Length = 167
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/55 (32%), Positives = 20/55 (36%)
Frame = -2
Query: 416 GDGLAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGNGKGDSEGTPHY 252
GD +D + S S S AD DA CS G G G G G Y
Sbjct: 31 GDSEYDDAAAAVSSSSSLTTGEGSSVADDDDDDAESCS-GGSGGGYGRKNGNGQY 84
>04_03_0397 -
15362353-15363383,15385301-15385910,15386890-15387096,
15388287-15388313,15388397-15388471
Length = 649
Score = 28.7 bits (61), Expect = 4.7
Identities = 32/141 (22%), Positives = 56/141 (39%)
Frame = -2
Query: 689 RPNGRSQKFSTDEDLDEPRQRLAASVRAAPEPHDTQQQIPTE*ISPSQQRVQRRTSRIPP 510
R + R+ + D D+ ++ + +R + + Q Q + QQ Q+ R P
Sbjct: 236 RESLRNIRLKLDMPPDQRKRLIRRDLRVEHQEIERQLQEMQQLERERQQLEQQEIERQLP 295
Query: 509 SVLLLDGHTSKWFRIFLQHTREHDSSDQTVNGDGLAEDDGDQILSLDSRCFDTSSHYADT 330
S L+ K +H R + D + E GD+ + D D + +
Sbjct: 296 SRQQLEQQEIKPMPPRTRHGRHEPTPDPVSENE---ESSGDEYVQSD----DDNMENVEG 348
Query: 329 SSVDAHGCSDNGQGNGKGDSE 267
+ +D SD+G NG G+SE
Sbjct: 349 NEMDV---SDDGADNGSGNSE 366
>11_01_0716 + 5900598-5901167
Length = 189
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 302 DNGQGNGKGDSEGTP-HYGEVFSKNH 228
DNG GNG GD P +G++ + N+
Sbjct: 62 DNGNGNGNGDDGSPPRQFGDIVALNN 87
>06_03_0206 - 17898551-17900056,17900439-17900564,17902420-17902881
Length = 697
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 407 LAEDDGDQILSLDSRCFDTSSH 342
LAEDD D ++ D CF+ S H
Sbjct: 476 LAEDDNDNSVASDLHCFELSMH 497
>03_05_0819 + 27948797-27948956,27948976-27949202
Length = 128
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = -2
Query: 353 TSSHYADTSSVDAHGCSDNGQGNGKGD---SEGTPHYGE 246
T++ +A +SS + S G G GKGD S G +GE
Sbjct: 34 TAAPFASSSSSSSGAASSGGGGGGKGDGGASGGAEFFGE 72
>02_02_0335 +
9063749-9064216,9064846-9064890,9065351-9065470,
9066025-9067527
Length = 711
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -2
Query: 407 LAEDDGDQILSLDSRCFDTSSHYADTSSVDAHGCSDNGQGN 285
LAEDD D ++ D CF+ + H + D G + GN
Sbjct: 491 LAEDDDDDSVASDLHCFELNMHGSSIQMHDHTGPRRSYTGN 531
>07_03_0877 - 22240266-22241109,22241238-22241367,22241483-22241615
Length = 368
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 230 GSWRTLPRNVGYPRNRLFRCPVRCR 304
G+WRTLP+N G L RC CR
Sbjct: 35 GNWRTLPKNAG-----LSRCGKSCR 54
>03_05_0303 - 22939513-22939598,22940065-22940194,22940753-22941073
Length = 178
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 608 AAPEPHDTQQQIPTE*ISPSQQRVQRRTSRIPPSVLLLDG 489
A+ H T Q +P E P +RR+ R+P +L L G
Sbjct: 30 ASASYHHTIQALPRETAGPRAAARERRSGRVPAVLLALAG 69
>03_01_0038 -
340564-341108,341214-341463,341546-341649,341728-343255,
343995-344056,344578-344728
Length = 879
Score = 27.9 bits (59), Expect = 8.2
Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 2/130 (1%)
Frame = -2
Query: 695 PKRPNGRSQKFSTDEDLDEPRQRLAASVRAAPEPHDTQQQIPTE*ISPSQQRVQRRTSRI 516
PK P S KFS + E R+R DT++ P S + +QR + RI
Sbjct: 371 PKYPATESSKFS----IKEVRRRFKIVTG------DTRRGRP----SVYEDDLQRDSQRI 416
Query: 515 PPSVLLLDGHTSKWFRIFLQHTREHDSSDQTVNGDGLAEDDGDQILSLDSRCF--DTSSH 342
SV + + + + + R S Q DGL E +GD I S D+ F + H
Sbjct: 417 NDSVFKVRKDSKQSDK---DNLRPLTSGKQKQRNDGLGEINGDIITSKDTSIFYEEAKKH 473
Query: 341 YADTSSVDAH 312
D ++H
Sbjct: 474 LTDILEYNSH 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,473,605
Number of Sequences: 37544
Number of extensions: 519267
Number of successful extensions: 1963
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -