Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30394
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    54   1e-09
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.52 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.52 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.52 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   3.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   3.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.9  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    21   8.5  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   8.5  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 54.0 bits (124), Expect = 1e-09
 Identities = 24/69 (34%), Positives = 41/69 (59%)
 Frame = +3

Query: 258 WGTLGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITA 437
           +G +G A ++  S +GAA G   +G  I    V  P +  K++I V+    +AIYGL+ A
Sbjct: 13  FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 72

Query: 438 IVLSGMLEK 464
           ++++G LE+
Sbjct: 73  VLIAGGLEE 81



 Score = 39.1 bits (87), Expect = 4e-05
 Identities = 21/60 (35%), Positives = 31/60 (51%)
 Frame = +3

Query: 267 LGIAFSVALSVVGAAMGIHTTGVSIVGGGVKAPRIKTKNLISVIFCEAVAIYGLITAIVL 446
           LG   +V  S + A   I   G + V G  + PR+    ++ +IF E + +YGLI AI L
Sbjct: 94  LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYL 153



 Score = 25.8 bits (54), Expect = 0.40
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 506 LMAGYVMFGAGLAVGLVKSILWEFAVGYRG 595
           L  G+V  GAGLAVG    +   FA+G  G
Sbjct: 87  LFKGFVHLGAGLAVGF-SGLAAGFAIGIVG 115


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 481 LVCPSSSRTDGGIRDVRRWTRCWLG 555
           L+CP     DGG  ++  W RC LG
Sbjct: 610 LICP-----DGGRAEINEWERCNLG 629


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 481 LVCPSSSRTDGGIRDVRRWTRCWLG 555
           L+CP     DGG  ++  W RC LG
Sbjct: 610 LICP-----DGGRAEINEWERCNLG 629


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 0.52
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 481 LVCPSSSRTDGGIRDVRRWTRCWLG 555
           L+CP     DGG  ++  W RC LG
Sbjct: 610 LICP-----DGGRAEINEWERCNLG 629


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +2

Query: 494 QAAELMAGYVMFG-AGLAVGLVKSILWEFAV 583
           Q  EL+    +FG +G  +GL K  LW  AV
Sbjct: 749 QDCELVTAGELFGRSGYGIGLQKGSLWADAV 779


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +1

Query: 550 LGEIYSVGICCWVSWGSGAALTDAAKRCLGSSRSSSVENFWDLPLGLFGP 699
           +G I  V + CWV +     +T   K C+ S R+  V  +       F P
Sbjct: 274 VGVIMGVFLICWVPFFCVNIVTSYCKTCI-SGRAFQVLTWLGYSNSAFNP 322


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 452 TREHDSSDQTVNGDGLAE 399
           TREH S + T++ DG+ E
Sbjct: 349 TREHPSRNFTMSEDGMIE 366


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 619 HPLEQHQSPTIPNSKFPQNRFHQAN 545
           H    H +  I   +FPQN+F +++
Sbjct: 153 HVFSLHDNKLITMYRFPQNQFKESS 177


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
 Frame = +1

Query: 130 FLSYL-FVLLVGLAIPIFSLYYVLNG--------KGEQISLGWFLENTS 249
           F S+L F+LLV +A+ +++   V N         K ++I  G+FL + S
Sbjct: 84  FASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEIFNGYFLNSES 132


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -3

Query: 622 QHPLEQHQSPTIPNSKFPQNRFHQANSESSAEHHVSRHQ 506
           QH  +Q Q+  + N++ PQ +  Q   +   +    + Q
Sbjct: 423 QHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQ 461


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 314 HGCSDNGQGNGKGDS 270
           +G +DNG GNG  ++
Sbjct: 252 NGANDNGNGNGASNN 266


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 617 SVRAAPEPHDTQQQIPT 567
           S +A  EP DT   IPT
Sbjct: 16  SAQAELEPEDTMDYIPT 32


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 145 FVLLVGLAIPIFSLYYVL 198
           F +L G+A+   +LYY L
Sbjct: 5   FEILCGIAVLFLALYYYL 22


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 542 RVQRRTSRIPPSVLLLDGHTSKW 474
           R+QR+ + I P V  +D   ++W
Sbjct: 333 RIQRQENNIRPMVKQIDTVAAEW 355


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 118 KMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISL 225
           K  ++   L +  VG++     ++Y+ +  GE++SL
Sbjct: 235 KTLFYTVNLIIPCVGISFLSVLVFYLPSDSGEKVSL 270


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 118 KMRYFLSYLFVLLVGLAIPIFSLYYVLNGKGEQISL 225
           K  ++   L +  VG+      ++Y+ +  GE++SL
Sbjct: 248 KTLFYTVNLIIPCVGITFLTVLVFYLPSDSGEKVSL 283


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/51 (23%), Positives = 22/51 (43%)
 Frame = -2

Query: 692  KRPNGRSQKFSTDEDLDEPRQRLAASVRAAPEPHDTQQQIPTE*ISPSQQR 540
            K    + Q+    +   +P+Q+     +  P+P   QQQ   +   P QQ+
Sbjct: 1499 KTQQQQPQQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQ--QPQQQQ 1547


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,768
Number of Sequences: 438
Number of extensions: 5131
Number of successful extensions: 24
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)