Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30393
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 114 7e-26
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 101 6e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 78 6e-15
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 36 0.042
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.055
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 33 0.17
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.39
SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 30 2.1
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.1
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 2.1
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 29 2.7
SB_3739| Best HMM Match : Pkinase (HMM E-Value=0) 29 2.7
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 29 4.8
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36) 28 6.3
SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3) 28 6.3
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03) 28 8.4
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 28 8.4
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 114 bits (274), Expect = 7e-26
Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 2/95 (2%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 435 TREHALLAFTLGVKQLIVGVNKMDS--LNHHTVSP 533
TREHA+L +LGV QLIV +NK+D L +H P
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 101 bits (242), Expect = 6e-22
Identities = 43/84 (51%), Positives = 61/84 (72%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+++ F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQ
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
TREHA+LA T GVK L++ VNKMD
Sbjct: 270 TREHAMLAKTAGVKHLVILVNKMD 293
Score = 44.8 bits (101), Expect = 7e-05
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +2
Query: 125 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERD 244
Y G +DKRT+EK+E+EA+E + ++ +W LD + ERD
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 187
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 78.2 bits (184), Expect = 6e-15
Identities = 34/36 (94%), Positives = 35/36 (97%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 362
IDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 25 IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/20 (95%), Positives = 20/20 (100%)
Frame = +2
Query: 185 MGKGSFKYAWVLDKLKAERD 244
MGKGSFKYAWVLDKLKAER+
Sbjct: 1 MGKGSFKYAWVLDKLKAERE 20
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 35.5 bits (78), Expect = 0.042
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Frame = +3
Query: 261 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 440
I + + + +D PGH F G D +++VAA QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180
Query: 441 EHALLAFTLGVKQLIVGVNKMDSLNHHTVSPD-LRNQEGSILIHQEDW 581
E A GV +I +NK+D N +PD ++ Q ++ + EDW
Sbjct: 181 EAISHAQAAGV-PIIFAINKIDKPN---ANPDNIKTQLSTMNLLVEDW 224
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 35.1 bits (77), Expect = 0.055
Identities = 28/85 (32%), Positives = 40/85 (47%)
Frame = +3
Query: 252 HIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 431
HI L K + + +T ID PGH F G + D VL+VAA G ++
Sbjct: 64 HIGAFLVKLPSGEK-ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTV 118
Query: 432 QTREHALLAFTLGVKQLIVGVNKMD 506
++ HA+ A LIV +NK+D
Sbjct: 119 ESIRHAMHAKV----PLIVAINKID 139
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +3
Query: 306 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 485
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 486 VGVNKMD 506
+ NK+D
Sbjct: 123 ILQNKID 129
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.39
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_58045| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1752
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 594 CCRFRGPILGWPGDNIFGAFKPKCLGFKGIGQVE 695
C R R +LGW G + G F P+C G +V+
Sbjct: 6 CQRERQRVLGWSGVAVDGTFVPECTADGGYERVQ 39
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIV 386
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 2.1
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 56 THINIVVIGHVDSGKSTTTGHLIY 127
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Frame = -3
Query: 688 WPIPLNPRHFGLKA-PKMLSPGH-------PRMGPRKRQQL 590
WP LNP+H L A P LSP H P++ P+ RQ L
Sbjct: 470 WPHHLNPKHRQLLAPPPRLSPKHRQLLATPPQLSPKHRQLL 510
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -3
Query: 688 WPIPLNPRHFGLKAPKMLSPGHPRMGPRKRQQL 590
WP LNP+H L AP PR+ P+ RQ L
Sbjct: 622 WPHHLNPKHRQLLAPP------PRLSPKHRQLL 648
>SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 490
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 452 ARFHPRCQTAHRRSKQNGFTEPPYSEPRFEESRREYPHTSR 574
A F PR + +R ++N PYS+ EE R+ H +R
Sbjct: 118 ADFAPRARQPNREHRENERHNRPYSQGYHEEERKHSLHRTR 158
>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
Length = 520
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 8/104 (7%)
Frame = +3
Query: 300 TIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQ 479
TI + PG + +N++ +A+C +LI AA + + + +E + G K
Sbjct: 308 TITNYPGAKMVEENLL----EAECDILIPAANEKQITKKNAHRIKAKEKGTITNYPGAKI 363
Query: 480 LIVGVN-----KMDSL---NHHTVSPDLRNQEGSILIHQEDWLQ 587
+ G N + D + N V PDL G + + +WL+
Sbjct: 364 IAEGANGPTTPEADQILIANKQLVIPDLYLNAGGVTVSYFEWLK 407
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 163
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_15627| Best HMM Match : AMPKBI (HMM E-Value=3e-36)
Length = 255
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 377 HSAISLRGSCDHVLDEISVSR--SINDGNIVLASFELPESNIDVIPSHAQPLV 225
++ IS+R + V D + SIN G+I S P + +IPSH P++
Sbjct: 123 NNVISVRKTDMDVFDALDTDANLSINSGSIKSVSGSPPGTYGQIIPSHVTPVI 175
>SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)
Length = 169
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 464 PRCQTAHRRSKQNGFTEPPYSEPRFEESRREYPHTSRRLATTQ 592
PR RR+ + PPY E R E+R + P+ RR + T+
Sbjct: 77 PRPPYDDRRTSETR-PRPPYDERRVSENRPKPPYDDRRTSETR 118
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/61 (22%), Positives = 31/61 (50%)
Frame = +3
Query: 348 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTV 527
TGT+ D + + G+F++ ++ N + LLA +G+ + G+ +++ HT
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848
Query: 528 S 530
+
Sbjct: 849 A 849
>SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03)
Length = 307
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 697 GSTWPIPLNPRHFGLKAPKMLSPGHP 620
G + P L+P HF +K PK GHP
Sbjct: 3 GKSQPKFLSPAHFEVKPPKPSVKGHP 28
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/90 (23%), Positives = 37/90 (41%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 476
+T++D PGH IK +I G A +I GT E G ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVKIRIPGGLLPDTA 155
Query: 477 QLIVGVNKMDSLNHHTVSPDLRNQEGSILI 566
+ + G +K V + +G+I +
Sbjct: 156 KQLAGASKKKGKGAQAVEEGEESVKGNIKV 185
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,526,116
Number of Sequences: 59808
Number of extensions: 483465
Number of successful extensions: 1244
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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