Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30393
(699 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 153 1e-37
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 153 1e-37
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 153 1e-37
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 153 1e-37
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 100 1e-21
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 98 4e-21
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 68 5e-12
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 66 3e-11
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 41 0.001
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 41 0.001
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 38 0.005
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 38 0.006
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 35 0.045
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 35 0.060
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 35 0.060
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.14
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.24
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.24
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.24
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 31 0.56
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 31 0.56
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 31 0.56
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 31 0.56
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 31 0.97
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 31 0.97
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 31 0.97
At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family... 29 2.2
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 2.2
At3g07570.1 68416.m00907 membrane protein, putative similar to m... 28 5.2
At5g46550.1 68418.m05731 DNA-binding bromodomain-containing prot... 28 6.8
At1g62660.1 68414.m07071 beta-fructosidase (BFRUCT3) / beta-fruc... 28 6.8
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 27 9.0
At4g17060.1 68417.m02572 expressed protein 27 9.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 153 bits (370), Expect = 1e-37
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQ
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDS 509
TREHALLAFTLGVKQ+I NKMD+
Sbjct: 133 TREHALLAFTLGVKQMICCCNKMDA 157
Score = 128 bits (310), Expect = 3e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERD 244
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +1
Query: 544 IKKGVSSYIKKIGYNPAAVAFVAPFLDGPGTTFLE 648
I K VSSY+KK+GYNP + FV P G +E
Sbjct: 170 IIKEVSSYLKKVGYNPDKIPFV-PISGFEGDNMIE 203
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 153 bits (370), Expect = 1e-37
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQ
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDS 509
TREHALLAFTLGVKQ+I NKMD+
Sbjct: 133 TREHALLAFTLGVKQMICCCNKMDA 157
Score = 128 bits (310), Expect = 3e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERD 244
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +1
Query: 544 IKKGVSSYIKKIGYNPAAVAFVAPFLDGPGTTFLE 648
I K VSSY+KK+GYNP + FV P G +E
Sbjct: 170 IIKEVSSYLKKVGYNPDKIPFV-PISGFEGDNMIE 203
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 153 bits (370), Expect = 1e-37
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQ
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDS 509
TREHALLAFTLGVKQ+I NKMD+
Sbjct: 133 TREHALLAFTLGVKQMICCCNKMDA 157
Score = 128 bits (310), Expect = 3e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERD 244
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +1
Query: 544 IKKGVSSYIKKIGYNPAAVAFVAPFLDGPGTTFLE 648
I K VSSY+KK+GYNP + FV P G +E
Sbjct: 170 IIKEVSSYLKKVGYNPDKIPFV-PISGFEGDNMIE 203
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 153 bits (370), Expect = 1e-37
Identities = 71/85 (83%), Positives = 78/85 (91%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
IDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQ
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 435 TREHALLAFTLGVKQLIVGVNKMDS 509
TREHALLAFTLGVKQ+I NKMD+
Sbjct: 133 TREHALLAFTLGVKQMICCCNKMDA 157
Score = 128 bits (310), Expect = 3e-30
Identities = 60/68 (88%), Positives = 62/68 (91%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERD 244
DKLKAER+
Sbjct: 61 DKLKAERE 68
Score = 33.9 bits (74), Expect = 0.10
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +1
Query: 544 IKKGVSSYIKKIGYNPAAVAFVAPFLDGPGTTFLE 648
I K VSSY+KK+GYNP + FV P G +E
Sbjct: 170 IIKEVSSYLKKVGYNPDKIPFV-PISGFEGDNMIE 203
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 100 bits (239), Expect = 1e-21
Identities = 46/84 (54%), Positives = 59/84 (70%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEFE G + GQ
Sbjct: 167 VEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQ 226
Query: 435 TREHALLAFTLGVKQLIVGVNKMD 506
TREH LA TLGV +LIV VNKMD
Sbjct: 227 TREHVQLAKTLGVSKLIVVVNKMD 250
Score = 68.1 bits (159), Expect = 5e-12
Identities = 28/64 (43%), Positives = 46/64 (71%)
Frame = +2
Query: 50 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 229
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 230 KAER 241
+ ER
Sbjct: 158 EEER 161
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 98.3 bits (234), Expect = 4e-21
Identities = 51/123 (41%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Frame = +3
Query: 261 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK-NGQT 437
+A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG GQT
Sbjct: 307 VAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQT 366
Query: 438 REHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRNQEGSILIHQEDWLQPSCCRFRGPI 617
REHA + GV+Q+IV +NKMD + + DL Q H +LQ CRF+
Sbjct: 367 REHARVLRGFGVEQVIVAINKMDIVGYSKERFDLIKQ------HVGSFLQ--SCRFKDSS 418
Query: 618 LGW 626
L W
Sbjct: 419 LTW 421
Score = 76.2 bits (179), Expect = 2e-14
Identities = 31/63 (49%), Positives = 46/63 (73%)
Frame = +2
Query: 56 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKA 235
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 236 ERD 244
ER+
Sbjct: 298 ERE 300
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 68.1 bits (159), Expect = 5e-12
Identities = 34/87 (39%), Positives = 52/87 (59%)
Frame = +3
Query: 255 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
I+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+ G Q
Sbjct: 130 INTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------Q 182
Query: 435 TREHALLAFTLGVKQLIVGVNKMDSLN 515
T+EH LLA +GV ++V +NK D ++
Sbjct: 183 TKEHILLAKQVGVPDMVVFLNKEDQVD 209
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +2
Query: 38 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 172
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = +3
Query: 273 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 452
++ET+K + +D PGH D++KNMITG +Q D +L+V+ G QT+EH L
Sbjct: 124 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHIL 176
Query: 453 LAFTLGVKQLIVGVNKMD 506
LA +GV L+ +NK+D
Sbjct: 177 LARQVGVPSLVCFLNKVD 194
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTT 112
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +3
Query: 282 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 461
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 462 TLGVKQLIVGVNKMDSLN 515
+ +K +I+ NK+D +N
Sbjct: 178 MMRLKHIIILQNKIDLIN 195
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/78 (29%), Positives = 39/78 (50%)
Frame = +3
Query: 282 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 461
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 462 TLGVKQLIVGVNKMDSLN 515
+ +K +I+ NK+D +N
Sbjct: 178 MMRLKHIIILQNKIDLIN 195
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 38.3 bits (85), Expect = 0.005
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Frame = +3
Query: 276 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTRE 443
FE SK +V+ +D PGH + M+ G + D A+L++AA QT E
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE------TCPQPQTSE 165
Query: 444 HALLAFTLGVKQLIVGVNKMDSLNHH 521
H + +K +I+ NK+D + +
Sbjct: 166 HLAAVEIMQLKHIIILQNKIDLIQEN 191
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +3
Query: 294 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 473
+V+ +D PGH + M+ G + D A+LI+AA QT EH + +
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHL 173
Query: 474 KQLIVGVNKMDSLNHH 521
K +I+ NK+D + +
Sbjct: 174 KDIIIIQNKIDLIQEN 189
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 35.1 bits (77), Expect = 0.045
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +3
Query: 306 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 485
+D PGH F G D A+++VAA G QT E A+ ++
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDG-------IRPQTNE-AIAHAKAAAVPIV 608
Query: 486 VGVNKMDSLNHHTVSPDLRNQE-GSILIHQEDW 581
+ +NK+D SPD QE SI + EDW
Sbjct: 609 IAINKIDK---EGASPDRVMQELSSIGLMPEDW 638
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.7 bits (76), Expect = 0.060
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 234 LSVTWYHIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+S+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 190 ISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.7 bits (76), Expect = 0.060
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +3
Query: 234 LSVTWYHIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+S+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 190 ISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = +3
Query: 279 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 458
E S Y + +ID PGH DF + S A+L+V A G QT + LA
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG-------VQAQTVANFYLA 183
Query: 459 FTLGVKQLIVGVNKMD 506
F + ++ +NK+D
Sbjct: 184 FEANL-TIVPVINKID 198
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 29 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 148
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGG 139
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.24
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTTGHLIYKCG 136
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 446
Y V IID PGH DF + D A+L++ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI 142
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 31.5 bits (68), Expect = 0.56
Identities = 22/70 (31%), Positives = 35/70 (50%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 482
+ID PGH F G+S D A+L+V + + G+ QT E +L + +
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV-----DIKHGLEP--QTIE-SLNLLRMRNTEF 756
Query: 483 IVGVNKMDSL 512
I+ +NK+D L
Sbjct: 757 IIALNKVDRL 766
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 291 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 446
Y V IID PGH DF + D A+L++ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI 142
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 31.5 bits (68), Expect = 0.56
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +3
Query: 297 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 476
+ +ID PGH F G++ D A+L+V + G+ QT E L VK
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV-----DIMRGLEP--QTIESLNLLRRRNVK 610
Query: 477 QLIVGVNKMDSL 512
I+ +NK+D L
Sbjct: 611 -FIIALNKVDRL 621
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 30.7 bits (66), Expect = 0.97
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 276 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 401
+E + + + +ID PGH DF + + + A+L+V A G
Sbjct: 147 YEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 163
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 30.7 bits (66), Expect = 0.97
Identities = 22/70 (31%), Positives = 34/70 (48%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 482
+ID PGH F G+S D A+L+V + G+ QT E +L + +
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV-----DITHGLQP--QTIE-SLNLLRMRNTEF 164
Query: 483 IVGVNKMDSL 512
I+ +NK+D L
Sbjct: 165 IIALNKVDRL 174
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 30.7 bits (66), Expect = 0.97
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +3
Query: 303 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 482
+ID PGH F G+S D A+L+V + G+ QT E +L + +
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV-----DIMHGLEP--QTIE-SLNLLRMRNTEF 823
Query: 483 IVGVNKMDSL 512
IV +NK+D L
Sbjct: 824 IVALNKVDRL 833
>At2g34870.1 68415.m04281 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 116
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 335 DEISVSRSINDGNIVLASFELPESNIDVIPSHAQPLV-CPIPKHI*RILYPFPGPPS 168
DE+ V+ + ++ N + LP + +PS P V P P +I R+ +PFP P S
Sbjct: 36 DEV-VTTTTDEANNLPFPPGLPFGGVPPLPSLFPPFVPSPFPGNIPRLPFPFPFPTS 91
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 285 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 386
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCG 136
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At3g07570.1 68416.m00907 membrane protein, putative similar to
membrane protein SDR2 (GI:1747306) [Mus musculus]
Length = 369
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 615 ILGW-PGDNIFGAFKPKCLGFKGIGQVEP 698
I+GW P D G KP LG K G+V P
Sbjct: 98 IVGWIPSDGGSGTVKPYLLGGKSPGEVNP 126
>At5g46550.1 68418.m05731 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 494
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 610 PRKRQQLGCSQSS*CMRILPS*FLKSGLTVWWFSESI 500
P+K+Q+L C SS C+ +L FL W F E +
Sbjct: 59 PKKKQRLDCDWSSQCLALLR--FLMEHRGGWLFKEPV 93
>At1g62660.1 68414.m07071 beta-fructosidase (BFRUCT3) /
beta-fructofuranosidase / invertase, vacuolar identical
to beta-fructosidase GB:CAA67560 GI:1429209 [Arabidopsis
thaliana]; supported by full-length cDNA GI:14517549;
identical to cDNA Beta-fructosidase GI:3115854
Length = 648
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = -2
Query: 536 IWAHCMVVQ*IHFVYSYDELFDTEGESEQGMLTG-LTVLRDTSFEFTGTGSYDE 378
+W H + IH++Y + + G+ TG T L D S TGS DE
Sbjct: 148 VWGHAVSKDLIHWLYLPIAMVPDQWYDANGVWTGSATFLDDGSIVMLYTGSTDE 201
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -2
Query: 341 VLDEISVSRSINDGNIVLASFELPESNIDVIPSHAQPLVCPIPKH 207
V + + + + I DG V A +P + V+ HA P+ P H
Sbjct: 68 VAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSH 112
>At4g17060.1 68417.m02572 expressed protein
Length = 310
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 458 FHPRCQTAHRRSKQNGFTEPPYSEPRFEESRREYPHTSR 574
F+PR Q++ S+ NG++ S PR + Y +SR
Sbjct: 184 FNPRIQSSRSSSRVNGYSRKDGSYPRNTGASNGYGSSSR 222
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,928,550
Number of Sequences: 28952
Number of extensions: 344627
Number of successful extensions: 1075
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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