Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30392
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 28 1.5
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch... 27 3.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.5
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 26 6.1
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 6.1
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 8.0
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 25 8.0
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo... 25 8.0
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 25 8.0
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 506 PLPQANLPSGQIGSSVFKIG 447
P+P+A LPS IG VF IG
Sbjct: 380 PVPEARLPSMMIGCIVFPIG 399
>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 563
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = -1
Query: 297 PSVVRRKYSSAGLPCTTDQRSAHLQLRRHLVASHEKYCIPANQLI 163
P V+ Y+SAG+ R +L+L ++ C+P ++I
Sbjct: 200 PDVILNFYNSAGITPLESSRLINLKLNEISEQEYKHLCLPDKEII 244
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 3.5
Identities = 26/92 (28%), Positives = 33/92 (35%)
Frame = -3
Query: 616 SQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQLRCHKPIYLQDK*VRPFSRLVKLF 437
S S + SSST + + SS S P ++S S L HK P S F
Sbjct: 367 SFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVS---SAF 423
Query: 436 VASRVCHSCSLYPSSRRFVYQDRKPIQTGKLS 341
+ S + SS KPI T S
Sbjct: 424 YHNSTSSRSSSHSSSHSLSSLSSKPILTASSS 455
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 558 HLCSLVYHYRTILFQCNSAATSQFTFRTNRFV 463
+LC V+ RT LF CN + S +R + +
Sbjct: 502 NLCDQVWLDRTNLFPCNRSTRSTLPYRPTKLL 533
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 352 PSGLAFDLDKQTCDWKGKVNNCDKLEKPRKVLPILKTDEPICPEGKLACGSGVALK 519
PSG+ ++ K T W G N + R + + + E C GK+ G L+
Sbjct: 573 PSGVCLEIKKGTFSWSGPGQNAAE-PTLRDIDFVARRGELCCIVGKVGMGKSSLLE 627
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = +1
Query: 544 QTAKMNPMKMLALSNWTQIERLTVXLTSASYLTVSVLLTVHVFQVEF 684
Q K+ P +LSNWT+ E L + T L + + V F
Sbjct: 1647 QWVKLQPTNFDSLSNWTKEETLKLLNMMGKSSTTHSLKLLSTYMVGF 1693
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 201 KRQDDDGAGDEPNADQLCTVDPPMNISVSPPK 296
K Q + G G E QLC VDP +S++ P+
Sbjct: 359 KEQAESGEGVEQI--QLCAVDPNTKLSITIPE 388
>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 589 SSTVQAFSSDSSLQSGLPLQNNSFS--MQLRCHKPIYLQDK*VRPFS 455
SS ++ SSD++ G PLQN F + P DK PFS
Sbjct: 652 SSDFESKSSDNTSLDGTPLQNTDFKKVATVEDDSPFDELDKFSSPFS 698
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.4 bits (53), Expect = 8.0
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -3
Query: 568 SSDSSLQSGLPLQNNSF-SMQLRCHKPIYLQDK*VRPFSRLVKLFVASRVCHSCSLYPSS 392
++D+++ +G+ +Q+ S S++ P+ L D PF R++ L V + ++ S
Sbjct: 91 ANDNTVSNGIKIQDCSERSLRESQSGPLLLVD----PFQRVICLHVYQGLLTIIPIFKSK 146
Query: 391 RRFVYQDRKPIQTGKLSV 338
+RF+ P SV
Sbjct: 147 KRFMTSHNNPSLHDNFSV 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,844
Number of Sequences: 5004
Number of extensions: 55131
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -