Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30392
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0426 - 17451731-17451886,17451974-17452079,17452289-174523...    32   0.51 
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    30   1.6  
03_02_0803 + 11365959-11366390,11366470-11366502,11367158-113672...    30   1.6  

>09_04_0426 -
           17451731-17451886,17451974-17452079,17452289-17452387,
           17452782-17452888,17452985-17453230,17454187-17454461,
           17454834-17454886,17455163-17455455
          Length = 444

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +3

Query: 495 LWQRSCIEKELFCNGKPDCK-DESDENACTVELDPNRAPDCDXNQCVLPDCFCSADGTRI 671
           LW    I  E+  N   +C+   SD  AC+  +D   + + D      P C  + DG   
Sbjct: 226 LWSHGVISDEVLANITKNCRFSPSDGKACSDAMDAFDSGNTDPYDIYGPVCINAPDGKFF 285

Query: 672 PGGI*P 689
           P  I P
Sbjct: 286 PSRIVP 291


>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
            14058450-14058570,14058926-14059320,14059410-14059534,
            14059646-14059876,14060012-14060484,14060587-14060693,
            14060842-14061172,14061222-14061250,14061345-14061901,
            14062170-14062255,14062344-14062406,14062646-14063001,
            14063101-14063356
          Length = 1272

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 516  EKELFCNGKPDCKDESDENACTVELDPNRAP 608
            +++L C+G  D KD S+  AC   +D N  P
Sbjct: 1002 QQKLSCSGDEDTKDSSNSIACEAIIDVNTVP 1032


>03_02_0803 +
           11365959-11366390,11366470-11366502,11367158-11367214,
           11367784-11367945,11367987-11368139,11368218-11368295,
           11368377-11368469,11368981-11369071,11369091-11369209
          Length = 405

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 469 VRPFSRLVKLFVASRVCHSCSLYPSSR 389
           ++PF     L V  ++CH C+LYP+++
Sbjct: 202 LKPFKVCFILLVMEKMCHVCNLYPNNK 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,110,251
Number of Sequences: 37544
Number of extensions: 384722
Number of successful extensions: 1076
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)