Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30392
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 42 4e-04
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 41 9e-04
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 41 0.001
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 39 0.005
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 38 0.011
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.014
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 37 0.014
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 37 0.018
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 36 0.024
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 36 0.032
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 35 0.074
SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6) 35 0.074
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 34 0.098
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.098
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.098
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.098
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 33 0.17
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 33 0.17
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 33 0.23
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 33 0.23
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 33 0.23
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 33 0.30
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 32 0.40
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 32 0.40
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 32 0.52
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 31 0.69
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 31 0.92
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 31 1.2
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 31 1.2
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 29 3.7
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 29 3.7
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06) 28 6.5
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 28 6.5
SB_35754| Best HMM Match : DUF755 (HMM E-Value=2.4) 28 8.5
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 28 8.5
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 28 8.5
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 44.8 bits (101), Expect = 7e-05
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 498 WQRSCIEKELFCNGKPDCKDESDENACTVELDPNR 602
W + CI+ C+GKP+C D SDEN C ++P+R
Sbjct: 281 WWKQCIDISYKCDGKPECADHSDENDCPPLINPDR 315
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDEN 572
CI + C+GK DC D SDE+
Sbjct: 371 CIPPQWICDGKDDCGDRSDES 391
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSADGTRIPGG 680
CI K C+G+ DC D SDE C ++ +C+ NQCV C + PGG
Sbjct: 103 CIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNCN-NQCVPLSWKCDGEKDCRPGG 158
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/37 (45%), Positives = 21/37 (56%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC 614
+ C+ + L C+GKPDC D SDE C V NR C
Sbjct: 1354 QKCLNRTLQCDGKPDCSDYSDEAHCRVRKSINRNVVC 1390
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLP 638
CI+ C+G PDC D SDE+ C PN DC+ Q P
Sbjct: 1316 CIKSSFVCDGVPDCNDHSDEDDC-----PN--SDCNLEQIYCP 1351
Score = 29.9 bits (64), Expect = 2.1
Identities = 27/115 (23%), Positives = 44/115 (38%)
Frame = +1
Query: 346 TCPSGLAFDLDKQTCDWKGKVNNCDKLEKPRKVLPILKTDEPICPEGKLACGSGVALKKN 525
TC S K + W G V + + P ++P D C C + +
Sbjct: 1516 TCSSNNGTRTCKCSPSWSGSVCSKLNITCPAGLIPCAVGDNGQCENSTSVCSNNY----D 1571
Query: 526 CSVMVNQTAKMNPMKMLALSNWTQIERLTVXLTSASYLTVSVLLTVHVFQVEFDP 690
C + +Q + P +A+ I + V L A +LT +H+F V +DP
Sbjct: 1572 CGLTQDQLSNYCP-PYIAVGVAGGILLIIVVLIVAYFLTKGRRKKLHLFNVFYDP 1625
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +3
Query: 507 SCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSAD 659
+CI +E C+ + DC D SDE C PN C C+ C D
Sbjct: 2468 TCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTSGHCIANSSVCDGD 2518
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSAD 659
C+ + C+G DC+D SDE C V C +C+ D C D
Sbjct: 3019 CVYRSRVCDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCDGD 3068
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DXNQCVLPDCFC 650
R CI+++ C+G+ DC D SDE C +E N C + ++C+ C
Sbjct: 1098 RHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQVC 1147
Score = 36.3 bits (80), Expect = 0.024
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFC 650
R CI + C+G+ DC D SDE C + C +C+ C
Sbjct: 3139 RRCIPNQWKCDGESDCNDGSDEKGCPPKQCAKHQYRCASGRCISASWVC 3187
Score = 35.5 bits (78), Expect = 0.043
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSAD 659
CI + C+ + DC D SDE C P C +CV D C +
Sbjct: 2221 CINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTCPNGRCVSYDFLCDGE 2270
Score = 34.7 bits (76), Expect = 0.074
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDCDXNQCV 632
CI K C+G+ DC D SDE + C+ + DP C +C+
Sbjct: 59 CIPKSAVCDGENDCGDMSDEPSNCSAHICDPKLEFQCANGRCI 101
Score = 34.3 bits (75), Expect = 0.098
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENA--CTVELDPNRAPDCDXNQCVLPDCFCSAD 659
CI ++ C+G DC D SDE A C V +A +C+ + C +
Sbjct: 3058 CISRDWLCDGDNDCGDSSDEKAGECHVTCPAGQARCATGRRCIPSEWRCDGE 3109
Score = 34.3 bits (75), Expect = 0.098
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENA--CT 581
R CI E C+G+ DC+D SDEN+ CT
Sbjct: 3097 RRCIPSEWRCDGESDCEDGSDENSAQCT 3124
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
CI K+ C+G DC D SDE+ C
Sbjct: 100 CINKKWRCDGMKDCADGSDESTC 122
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDE--NACTVELDPNRAPDCDXNQCV 632
C+++ C+ DC D SDE C + N CD N+C+
Sbjct: 3258 CVDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNNKCI 3300
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCV 632
CI + C+G DC D SDE P R C + CV
Sbjct: 3219 CIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCINHVCV 3259
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDXNQCVLPDCFC 650
C+ + C+G+ DC D SDE C P + N C+ C
Sbjct: 2260 CVSYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSSWLC 2307
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSADGTRIPGGI 683
CI K C+G+ DC D SDE P C +QC + C+ +P G+
Sbjct: 1140 CIAKSQVCDGRVDCPDASDE-----------GPGCGLDQCHSNNGGCAQLCMDVPEGV 1186
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENA---CTVELDPNRAPDCDXNQCVLPDCFCSAD 659
C+ K C+G DC D SDE++ + +P C+ +C+ C +
Sbjct: 2180 CVRKSFVCDGDNDCHDGSDESSLVCASWTCEPGHF-SCNNGRCINAKWVCDRE 2231
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDE-NACTVEL-DPNRAPDCDXNQCV 632
CI + C+G+ DC D SDE ++C V + P D +C+
Sbjct: 2938 CISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGTYQCADNRKCI 2980
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACT 581
CI C+ DC D SDE CT
Sbjct: 1060 CIPLRFVCDADDDCGDRSDERNCT 1083
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDE 569
CI L C+G DC D SDE
Sbjct: 2382 CISTRLLCDGDNDCGDNSDE 2401
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
CI C+G DC D SDE C
Sbjct: 2508 CIANSSVCDGDTDCADGSDEKDC 2530
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCV 632
CI C+ DC D SDE C + CD C+
Sbjct: 3180 CISASWVCDHVNDCGDGSDEQQCINRTCADGQFSCDDGLCI 3220
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
C ++ C+G DC D SDE C
Sbjct: 922 CKPRDWVCDGFDDCGDGSDEKGC 944
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDXNQCVLPDCFCSAD 659
CI C+G DC D DE E N + C +CV C D
Sbjct: 2300 CIPSSWLCDGSDDCGDGWDERQDCRERPCNVSEFRCTSGECVPASWRCDGD 2350
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSAD 659
C+ +EL C+G C D SDE C + PD +CV P FC+ +
Sbjct: 50 CVGQELRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCNGE 96
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCS 653
C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 86 CVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCN 131
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 507 SCIEKELFCNGKPDCKDESDE 569
+C+ L CNG DC+D SDE
Sbjct: 122 TCVTWSLTCNGVSDCQDGSDE 142
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSAD 659
C+ +E+ C+G C D SDE C + PD +CV P FC+ +
Sbjct: 50 CVGQEVRCDGDYACVDHSDERNCACRSAEFKCPD---GKCVHPSKFCNGE 96
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCS 653
C+ FCNG+ DC D SDE +C A C CV C+
Sbjct: 86 CVHPSKFCNGESDCTDGSDEWSCDNSCSSRHA--CADGTCVTWSLTCN 131
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 507 SCIEKELFCNGKPDCKDESDENACTVELDPNRAP 608
+C+ L CNG DC+D SDE + D R P
Sbjct: 122 TCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPP 155
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLP 638
CI+ C+G PDC D SDE+ C PN DC+ Q P
Sbjct: 19 CIKSSFVCDGVPDCNDHSDEDDC-----PN--SDCNLEQIYCP 54
Score = 37.1 bits (82), Expect = 0.014
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENACTVE 587
+ C+ + L C+GKPDC D SDE C E
Sbjct: 57 QKCLNRTLQCDGKPDCSDYSDEAHCRGE 84
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 37.1 bits (82), Expect = 0.014
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENACTVELDPNRAPDC-DXNQCVLPDCFC 650
R CI+++ C+G+ DC D SDE C +E N C + ++C+ C
Sbjct: 125 RHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQVC 174
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDE 569
CI K C+G+ DC D SDE
Sbjct: 167 CIAKSQVCDGRVDCPDASDE 186
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACT 581
CI C+ DC D SDE CT
Sbjct: 87 CIPLRFVCDADDDCGDRSDERNCT 110
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 36.7 bits (81), Expect = 0.018
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTV-ELDPNRAPDCDXNQCVLPD 641
C+ + L CNG+ DC+D SDE C + + AP + VL D
Sbjct: 739 CVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAPQPTKGKTVLGD 783
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 36.3 bits (80), Expect = 0.024
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNR 602
CI+ C+G DC+D SDE C + L P R
Sbjct: 142 CIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAP----DCDXNQCVLPDCF 647
C+ KE C+G DC D SDE+ C P P C +QCV P+ F
Sbjct: 313 CVLKEWLCDGMDDCGDSSDEDNCPTR-PPYTCPPSDFTCANSQCV-PNSF 360
Score = 34.7 bits (76), Expect = 0.074
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC--TVELDPNRAPDCDXNQCVLPDCFCSAD 659
C+ C+G+ DC D SDE+ C T N CD +C+ C +
Sbjct: 355 CVPNSFRCDGENDCGDRSDESGCKPTTTCSANEF-RCDDGRCITSTFRCDRE 405
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCV-LPDCFCSADGT 665
C+ + C+G+ DC D SDE C + C +C+ LP DGT
Sbjct: 483 CVHRRWICDGERDCLDGSDEAGCGTIGCSSDEFTCTNQKCIPLPQ---KCDGT 532
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAP-DCDXNQCVLPD 641
CI C+ + DC D SDE C P P C N+ + D
Sbjct: 435 CIPGRFRCDHRSDCLDGSDEQNCQNVTRPTPPPVKCRKNERMCAD 479
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 36.3 bits (80), Expect = 0.024
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 507 SCIEKELFCNGKPDCKDESDENAC 578
+CI++ CNGK DC D SDE C
Sbjct: 15 TCIDRNEHCNGKIDCPDASDEKGC 38
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 35.9 bits (79), Expect = 0.032
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELD--PNRAPDCDXN 623
C +K +C+G+ DC D SDE C+ + P A C N
Sbjct: 236 CEDKRWWCDGQDDCNDGSDEKNCSASANPTPTNAQGCKLN 275
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 35.5 bits (78), Expect = 0.043
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 349 CPSGLAFDLDKQTCDWKGKVNNCDK-LEKPRKVLPILKTDEPIC 477
CP+GL + + K CDW V +CD+ P P+ T +P C
Sbjct: 1269 CPAGLKWSVKKTACDWPRYV-DCDRTTSTPPTPTPLTPTTKPAC 1311
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 349 CPSGLAFDLDKQTCDWKGKVNNCD-KLEKPRKVLPILKTDEPIC 477
C GL + + K TCDW V +CD K P P T +P C
Sbjct: 814 CSPGLKWSITKTTCDWPRNV-DCDRKTPTPPSPTPPTTTPKPAC 856
Score = 31.9 bits (69), Expect = 0.52
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 349 CPSGLAFDLDKQTCDWKGKVNNCDKLEKPRKVLPILKTDEP-ICPEGKLACGSGVALKKN 525
CP+GL + + K CDW V +CD + P T P I P L C + + L
Sbjct: 919 CPAGLKWSVKKTACDWPRYV-DCD---RTTSTPPTPTTHTPTIKPACDLHCQT-LNLDGT 973
Query: 526 CSVMVN 543
C+VM N
Sbjct: 974 CTVMPN 979
Score = 31.5 bits (68), Expect = 0.69
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 349 CPSGLAFDLDKQTCDWKGKVNNCDK 423
CP+GL + + K TCDW V +CD+
Sbjct: 1024 CPAGLKWSVKKTTCDWPRYV-DCDR 1047
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 349 CPSGLAFDLDKQTCDWKGKVNNCDK 423
CP+GL + + K CDW V +CD+
Sbjct: 1169 CPAGLKWSVKKTACDWPRYV-DCDR 1192
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +1
Query: 346 TCPSGLAFDLDKQTCDWKGKVNNCDKLEKPRKVLPIL 456
+CP GL ++++K CD V NC++ E L IL
Sbjct: 1484 SCPHGLKWNIEKNACDHPVNV-NCNREEYDVLTLGIL 1519
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 34.7 bits (76), Expect = 0.074
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFC 650
CI K L+C+G C D SDE C P+ C +C++ C
Sbjct: 103 CIRKNLYCDGDFACVDGSDETRCEC---PSNMFLCPSGECIMGTQLC 146
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
CI C+GK DC D +DE C
Sbjct: 139 CIMGTQLCDGKKDCTDNTDEKNC 161
>SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6)
Length = 551
Score = 34.7 bits (76), Expect = 0.074
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -1
Query: 279 KYSSAGLPCTTDQRSAHLQLRRHLVASHE-KYCIPANQLITHRDTETRVEPWRSAKTG 109
++S A P T+ + HL+ +R L+ + E K + + L+T TE +E WR ++ G
Sbjct: 382 EFSEACHPYTSGRVGQHLKTKRGLITTPELKDLLDSGDLVTATATEKPIEEWRPSELG 439
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 34.3 bits (75), Expect = 0.098
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENACTVELDPNRAP 608
R CI K C+GK DC DE C P P
Sbjct: 54 RKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTP 88
Score = 31.1 bits (67), Expect = 0.92
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
C+++ C+G DC D SDE C
Sbjct: 107 CVDRMKICDGMRDCADGSDERGC 129
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXN-QCVLPDCFC 650
CI + C+ + DC D SDE C+ ++ + C + +C+ C
Sbjct: 16 CITRAFRCDDEDDCLDNSDEQGCSRKVCRDDQFQCGTSRKCIRKSKIC 63
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 34.3 bits (75), Expect = 0.098
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 510 CIEKELFCNGKPD-CKDESDENACTVELDPNRAPDCDXNQCVLPDCFC 650
C+ K CNG D C D SDE+ CT L + C +C+ FC
Sbjct: 671 CVTKTSRCNGMRDSCVDGSDESGCTCGLHEFQ---CSSGECIEVATFC 715
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
CIE FC+GK DC D DE C
Sbjct: 708 CIEVATFCDGKKDCGDGFDETHC 730
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 34.3 bits (75), Expect = 0.098
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFC 650
CI K C+G DC D+SDE C N+ CD QC+ D C
Sbjct: 1321 CIPKMWRCDGMLDCTDKSDEEDCP-PCKENQF-RCDNGQCIDGDPRC 1365
Score = 31.5 bits (68), Expect = 0.69
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +1
Query: 400 GKVNNCDKLEKPRKVLPILKTDEPICPEG-KLACGSGVALKKNCSVMVNQTAKMNPMKML 576
G++ + P + K + P+G AC +GV L ++ N+T + P L
Sbjct: 426 GRLKLQSNVYSPMGIHVFEKARQDPLPKGISCACPTGVRL-----LLDNKTCENGPKHFL 480
Query: 577 ALSNWTQIERLTVXLTSASYLTVSVLLTVHVFQVEFDPIQ 696
L+ T + R+++ + + + + H V+FDPI+
Sbjct: 481 LLARRTDLRRISLDTPDHTDVVLPFVGIKHGIAVDFDPIE 520
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 34.3 bits (75), Expect = 0.098
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSA-----DGTRIP 674
CI+ C+G DCKD SDE+ C + + C CV C DGT P
Sbjct: 1167 CIDVVGLCDGTDDCKDASDESRCDHKCSKDEY-QCVSGACVKWPLTCDGKKDCEDGTDEP 1225
Query: 675 G 677
G
Sbjct: 1226 G 1226
Score = 31.1 bits (67), Expect = 0.92
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 507 SCIEKELFCNGKPDCKDESDE-NACTVEL 590
+C++ L C+GK DC+D +DE C V++
Sbjct: 1204 ACVKWPLTCDGKKDCEDGTDEPGICGVQI 1232
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSADGT 665
C+ ++L C+G C D SDE C L A C+ +C+ D DGT
Sbjct: 1131 CVSRDLICDGDNACLDFSDEANCKC-LSSKFA--CESGECI--DVVGLCDGT 1177
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 33.5 bits (73), Expect = 0.17
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNR 602
CI +L C+ DC D SDE C V+ DP R
Sbjct: 716 CISLDLLCDFNKDCLDGSDEENCGVQ-DPGR 745
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/50 (32%), Positives = 19/50 (38%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSAD 659
CI C+ DC D SDEN C CD +C+ C D
Sbjct: 200 CIPSSWKCDHDNDCGDNSDENNCPYSTCNPSQFKCDNGRCISSKWRCDHD 249
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 603 APDCDXNQCVLPDCFCSADGTRIPGGI*P 689
A C + C LP+CFCS G +PGG+ P
Sbjct: 566 AERCHPDVCKLPNCFCS--GALVPGGLNP 592
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENACTVE 587
R CI+ CN + DC+D SDE +C E
Sbjct: 402 RQCIDDFKQCNNRQDCRDGSDEISCPPE 429
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 33.1 bits (72), Expect = 0.23
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQC 629
R C+ C+G+ DC D SDE C+ P P D +C
Sbjct: 159 RRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCP-ADWVRC 199
Score = 31.9 bits (69), Expect = 0.52
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDP 596
C+ L C+G DC D SDE +C P
Sbjct: 115 CVFYRLVCDGVDDCGDSSDEMSCNATATP 143
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDXNQCVLPDCFCSAD 659
CI C+G DC D SDE +C+ + C +C+ C D
Sbjct: 22 CIPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNGRCISRSWVCDRD 72
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCS 653
C+++ L C+G C D SDE C+ P+ C +C+ C+
Sbjct: 195 CVKRGLLCDGDKACLDGSDEKHCSC---PSNMFLCPSGECIPTTALCN 239
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
CI CN + DC D +DE C
Sbjct: 231 CIPTTALCNNENDCSDNADERNC 253
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 32.7 bits (71), Expect = 0.30
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
C++++ CN K DC D SDE C
Sbjct: 157 CVDRDQLCNFKDDCGDNSDELPC 179
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENAC-TVELDPNRAPDCDXNQCVLPDCFCSAD 659
+ CI C+G+ DC D SDE C +P+ C +C+ C D
Sbjct: 597 QKCIAATWKCDGEDDCGDNSDEINCPKATCNPDTQFRCTNGRCIPRRWVCDKD 649
Score = 32.7 bits (71), Expect = 0.30
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
CI K C+G+ DC ++SDEN C
Sbjct: 759 CIHKSWVCDGEFDCLNKSDENNC 781
Score = 31.9 bits (69), Expect = 0.52
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDE-NACTVELDPNRAPDCDXNQCVLPDCFCSAD 659
CI + C+ DC D SDE N+C C CV+ C D
Sbjct: 639 CIPRRWVCDKDDDCHDGSDERNSCATMTCSENEITCGNGICVVKRWVCDQD 689
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSAD 659
C+ K C+ DC D +DE C C +C+L C D
Sbjct: 679 CVVKRWVCDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCDGD 728
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXN--QCVLPDC 644
+ CI C+G DC D SDE C PN + C + QC +C
Sbjct: 716 KRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 759
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 346 TCPSGLAFDLDKQTCDWKGKVNNCD 420
+CPSGL + + K TCDW V +CD
Sbjct: 145 SCPSGLKWSVTKTTCDWPRYV-DCD 168
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 32.3 bits (70), Expect = 0.40
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 346 TCPSGLAFDLDKQTCDWKGKVNNCD 420
+CPSGL + + K TCDW V +CD
Sbjct: 52 SCPSGLKWSVTKTTCDWPRYV-DCD 75
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACT 581
CI L C+G DC D SDE CT
Sbjct: 35 CIPDVLKCDGSEDCADSSDEINCT 58
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 31.5 bits (68), Expect = 0.69
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 346 TCPSGLAFDLDKQTCDWKGKV 408
TCP GL F+ D CDW +V
Sbjct: 487 TCPPGLIFNTDLMVCDWSHEV 507
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 31.1 bits (67), Expect = 0.92
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = +3
Query: 438 KSFTNLENGRTYLS*R*IGLWQRSCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCD 617
++FTN+E+ Y + G W+ S K ++ + KD+ D V LD D
Sbjct: 1383 ENFTNIESWLGYRDQKAAGTWRWSDGSKSVYTDWDSSAKDDHDLGMDCVVLDAEEGKWRD 1442
Query: 618 XNQCVLPDCF-CSADGTRIPGG 680
+ C + F C D P G
Sbjct: 1443 -SSCAEKNSFLCKRDADDCPSG 1463
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Frame = +1
Query: 409 NNCDKLEKPRKVLPILKTDEPICPEG--------KLACGSGVALKK-NCS 531
NNCD KP + +LK + P+CP+ L CG GV ++ +CS
Sbjct: 141 NNCDTARKPTQ---LLKCELPVCPQWNAGDWGQCSLTCGGGVQTRRIDCS 187
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTV 584
CI+K C+ DC D SDE C +
Sbjct: 3216 CIQKSKLCDFTDDCGDNSDEGRCAL 3240
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 507 SCIEKELFCNGKPDCKDESDENAC 578
SCI+ C+ DC D SDEN C
Sbjct: 2104 SCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 28.7 bits (61), Expect = 4.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 507 SCIEKELFCNGKPDCKDESDENACT 581
SC + C+ DC D SDE +C+
Sbjct: 3631 SCTSSDNVCDFSDDCGDSSDERSCS 3655
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 507 SCIEKELFCNGKPDCKDESDENAC 578
SCI + L C+ + DC D DE +C
Sbjct: 2257 SCIMQSLRCDYQNDCSDGLDEASC 2280
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
CI L C+ DC DESDE C
Sbjct: 17 CISGALVCDLDDDCGDESDERGC 39
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 349 CPSGLAFDLDKQTCDWKGKVN 411
CP L FD K C+W KVN
Sbjct: 627 CPFNLKFDTKKLECEWPNKVN 647
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 597 NRAPDCDXNQCVLPDCFCSADGTRIPGGI*P 689
N A CD +C P+C CS D + PGG+ P
Sbjct: 25 NVAEKCDLEKCQPPNCRCS-DDFQPPGGLSP 54
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +3
Query: 504 RSCIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXN--QCVLPDC 644
+ CI C+G DC D SDE C PN + C + QC +C
Sbjct: 561 KRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 604
>SB_26236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 29.5 bits (63), Expect = 2.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 555 DESDENACTVELDPNRAPDCDXNQCV 632
D+ D+ C +P++ PD D ++CV
Sbjct: 410 DQGDQGECVTVPEPDQVPDSDRDECV 435
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
C+ + C+G DC D SDE C
Sbjct: 33 CVPRTWLCDGDNDCHDGSDEKNC 55
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 507 SCIEKELFCNGKPDCKDESDENACT 581
+CI + C+ DC D SDE AC+
Sbjct: 11 NCINRNYVCDKDNDCGDGSDEVACS 35
>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = -3
Query: 697 LELGQIPPGIRVPSAEQKQSGRTHWLXSQSGALFGSSSTVQAFSSDSSLQSGLPLQNNSF 518
L+ Q P R P Q+Q R H+L +QS + + VQ SSD++ S Q F
Sbjct: 584 LQQQQSAPETRPPQQPQQQ--REHYLQNQSLNVTNTQMPVQQGSSDNTQVS----QTGDF 637
Query: 517 SMQLRCHKPI 488
Q+ +PI
Sbjct: 638 QAQIETVEPI 647
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 29.1 bits (62), Expect = 3.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENAC 578
C+ + C+G DC+D +DE C
Sbjct: 109 CVHRNWKCDGSNDCRDGTDEVGC 131
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 507 SCIEKELFCNGKPDCKDESDENACT 581
+CI + C+ DC D SDE AC+
Sbjct: 145 NCINRNYVCDKDNDCGDGSDEVACS 169
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 28.3 bits (60), Expect = 6.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 531 CNGKPDCKDESDENAC 578
C+G+ DC+D SDE C
Sbjct: 100 CDGENDCRDGSDETGC 115
>SB_30805| Best HMM Match : Neur_chan_LBD (HMM E-Value=2.9e-06)
Length = 147
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/79 (24%), Positives = 33/79 (41%)
Frame = +1
Query: 406 VNNCDKLEKPRKVLPILKTDEPICPEGKLACGSGVALKKNCSVMVNQTAKMNPMKMLALS 585
+NN DK + + KTD + GK+ + + +C + V + L S
Sbjct: 35 INNADKSVRLAGGPELFKTDLNVWQGGKVEWVAPASFTSDCKLRVRYWPIDDQFCTLTFS 94
Query: 586 NWTQIERLTVXLTSASYLT 642
+WT ++ + T S LT
Sbjct: 95 SWTYDDQEIIIETDDSELT 113
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTVELDPNRAPDCDXNQCVLPDCFCSADGTR 668
CI C+G +C D SDE+ C + N C +CV C DG R
Sbjct: 221 CISGSSRCDGDYNCMDRSDEDGC--KCFTNEL-TCSSGRCVQSINLC--DGVR 268
>SB_35754| Best HMM Match : DUF755 (HMM E-Value=2.4)
Length = 604
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -1
Query: 672 EYVYRQQNRNSQVGRTG*XHSQALYLGPVRQC 577
E + + +N +GRTG S + Y GP+ +C
Sbjct: 457 EIILKSENEFPLIGRTGSGSSISKYTGPLMEC 488
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTV 584
C+ K C+ DC D SDE C +
Sbjct: 101 CLAKSSLCDTVHDCDDGSDEKNCPI 125
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 510 CIEKELFCNGKPDCKDESDENACTV 584
C+ K C+ DC D SDE C +
Sbjct: 914 CLAKSSLCDTVHDCDDGSDEKNCPI 938
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,972,355
Number of Sequences: 59808
Number of extensions: 454326
Number of successful extensions: 1471
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1470
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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