Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30392
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 23/85 (27%), Positives = 35/85 (41%)
 Frame = -3

Query: 610 SGALFGSSSTVQAFSSDSSLQSGLPLQNNSFSMQLRCHKPIYLQDK*VRPFSRLVKLFVA 431
           SG+L  S +       +SS  SG   ++ +  ++ R +    LQ       S L      
Sbjct: 238 SGSLPASPADSGVSDVESSTSSG-GNEDANLLLKARLNPNSSLQPSLASHHSHLSSALGR 296

Query: 430 SRVCHSCSLYPSSRRFVYQDRKPIQ 356
           S  CHS  +YPS+  F+     P Q
Sbjct: 297 S-ACHSPGVYPSTAGFLPPSYHPHQ 320


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 273 SSAGLPCTTDQRSAHLQLRRHLVASHEKY 187
           S  GL  TTD  S ++ LRRH   +   Y
Sbjct: 222 SKFGLGFTTDLLSYNILLRRHYSMNSTTY 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,364
Number of Sequences: 438
Number of extensions: 4056
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)