Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30392
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11320.1 68418.m01321 flavin-containing monooxygenase family ...    30   1.7  
At5g46220.1 68418.m05688 expressed protein contains Pfam profile...    27   9.2  

>At5g11320.1 68418.m01321 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana
          Length = 411

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 593 VQFDSASIFIGFIFAVWFTITEQFFFNATPLPQANLPSGQIG-SSVFKIGKTFRGFS 426
           ++FDS  +  G+   V   + E  FF    +P+   P+G  G   ++ +G T RG S
Sbjct: 313 IEFDSIILATGYKSNVPDWLKENSFFTKEGMPKTPFPNGWKGEKGLYTVGFTRRGLS 369


>At5g46220.1 68418.m05688 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616)
          Length = 465

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 282 RKYSSAGLPCTTDQRSAHLQLRRHLVASHEKYCIPANQL 166
           + +SS+ LP  TD     L LRRH + S+   C   N+L
Sbjct: 333 KPWSSSKLPYPTDVPDTALILRRHGIRSNLFSCFMFNEL 371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,124,302
Number of Sequences: 28952
Number of extensions: 302400
Number of successful extensions: 841
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)