Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30391
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    27   2.7  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    26   6.3  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    25   8.3  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   8.3  

>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 724 LLG--NSP*VWANLADLKNLKPPLNNIRLVLGIF 629
           LLG  + P +WA L++L   KPP+    L  GIF
Sbjct: 181 LLGYCSGPIIWAPLSELSGRKPPILIGMLGFGIF 214


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -3

Query: 238 LFPRVFL*RLYFAFEEASHCSLQSSLRKPIAFK*-LRTFIVHSCVYNIYHFISSILFKTR 62
           +FP +++  +    ++ +  +   +  K   F+  L  FI   C   + H++S+I+F   
Sbjct: 237 VFPAIWVYSICHLLKQCTSVTTYENASKARFFRRMLNAFIFIFCASPMLHYLSNIIFGN- 295

Query: 61  *YIYLLNYQV-PLFHFLDKV 5
            + Y L+  +  LF F++K+
Sbjct: 296 -FDYRLSVIIGDLFTFMEKI 314


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -3

Query: 649 RLVLGIFWGDGHQIMIFLLANKANFSQFGICTSNI 545
           R V G  W D  Q  +  + N+ NF  FG    NI
Sbjct: 170 RRVTGCTWKDEVQNGVLNVMNRLNFYSFGHIAENI 204


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 625 GDGHQIMIFLLANKANFSQF-GICTSNILTNYF 530
           GDGHQ+M+      A  S +  +C ++  T YF
Sbjct: 315 GDGHQVMVGYDDGWATLSPYLNLCCASSETEYF 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,099
Number of Sequences: 5004
Number of extensions: 56289
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)