Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30391
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     33   0.18 
SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)                 30   1.7  
SB_29891| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)               28   8.9  

>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
 Frame = +3

Query: 186 DASSKAKYRRYRKTLGNRNGFIQKLDKKGVHYGESRPYENSSNSKSTLILKSSDQDVFKF 365
           D S ++   R R+        +QKLD+   H    +P+E+ S+   T    S+D +  K 
Sbjct: 678 DGSIESCLARRREAETEAKVLLQKLDRNETHTSRDQPWESVSSHSRTSSGSSNDMEFTKE 737

Query: 366 LEEFVFEPVMASRDRTSEFISTVRSLQG-RFLNKP 467
            E  +   +   R   S   STV  L+    ++KP
Sbjct: 738 EETRLKSYIQQLRSERSTIGSTVLELESIHGMDKP 772


>SB_22014| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-10)
          Length = 497

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +3

Query: 402 RDRTSEFISTVRSLQGRFLNKPTVRDDRKAAVLE 503
           RDRT+EF S V+S+Q R     T+  D K +VLE
Sbjct: 41  RDRTTEFYSAVKSIQSRQSKLATMSKDFK-SVLE 73


>SB_29891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 177 LQCDASSKAKYRRYRKTLGNRNGFIQKLDKK 269
           +QCD S+K K RRY+        FI  LD++
Sbjct: 437 MQCDKSTKNKRRRYKTRKAEEEEFIFMLDEE 467


>SB_24733| Best HMM Match : Shugoshin_C (HMM E-Value=4.2)
          Length = 689

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 276 HYGESRPY--ENSSNSKSTLILKSSDQDVFKF 365
           HY ++ PY  E+ S+  STL ++   QD++K+
Sbjct: 16  HYHDTMPYYEESKSSILSTLYIEEGRQDIYKW 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,908,508
Number of Sequences: 59808
Number of extensions: 368523
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)