Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30391
         (726 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069832-1|AAL39977.1|  467|Drosophila melanogaster SD07852p pro...    44   2e-04
AE014134-2696|AAN10935.1|  467|Drosophila melanogaster CG4214-PB...    44   2e-04
AE014134-2695|AAF53520.2|  467|Drosophila melanogaster CG4214-PA...    44   2e-04
X78219-1|CAA55064.1|  310|Drosophila melanogaster SED5 protein.        42   6e-04

>AY069832-1|AAL39977.1|  467|Drosophila melanogaster SD07852p
           protein.
          Length = 467

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +3

Query: 390 VMASRDRTSEFISTVRSLQGRFLNKP-TVRDDRKAAVLETYPNS*VWQK*LVRILLVHIP 566
           VMA+RDRT EF + +RSLQ R + +   +RD RKA  +++Y    +  + + + +     
Sbjct: 157 VMAARDRTGEFANAIRSLQARNITRAVNIRDPRKAKQVQSYSEFMMVARFIGKNIASTYA 216

Query: 567 NWEKLALLA 593
             EKL +LA
Sbjct: 217 KLEKLTMLA 225



 Score = 35.5 bits (78), Expect = 0.074
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +2

Query: 497 VGNLSQFMSMAKVISKNITSTYTKLGKVSLVG*EENHYLMTVPPENSKN*PYII 658
           V + S+FM +A+ I KNI STY KL K++++  +++  L    P+  +   YII
Sbjct: 194 VQSYSEFMMVARFIGKNIASTYAKLEKLTMLAKKKS--LFDDRPQEIQELTYII 245


>AE014134-2696|AAN10935.1|  467|Drosophila melanogaster CG4214-PB,
           isoform B protein.
          Length = 467

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +3

Query: 390 VMASRDRTSEFISTVRSLQGRFLNKP-TVRDDRKAAVLETYPNS*VWQK*LVRILLVHIP 566
           VMA+RDRT EF + +RSLQ R + +   +RD RKA  +++Y    +  + + + +     
Sbjct: 157 VMAARDRTGEFANAIRSLQARNITRAVNIRDPRKAKQVQSYSEFMMVARFIGKNIASTYA 216

Query: 567 NWEKLALLA 593
             EKL +LA
Sbjct: 217 KLEKLTMLA 225



 Score = 35.5 bits (78), Expect = 0.074
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +2

Query: 497 VGNLSQFMSMAKVISKNITSTYTKLGKVSLVG*EENHYLMTVPPENSKN*PYII 658
           V + S+FM +A+ I KNI STY KL K++++  +++  L    P+  +   YII
Sbjct: 194 VQSYSEFMMVARFIGKNIASTYAKLEKLTMLAKKKS--LFDDRPQEIQELTYII 245


>AE014134-2695|AAF53520.2|  467|Drosophila melanogaster CG4214-PA,
           isoform A protein.
          Length = 467

 Score = 44.0 bits (99), Expect = 2e-04
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
 Frame = +3

Query: 390 VMASRDRTSEFISTVRSLQGRFLNKP-TVRDDRKAAVLETYPNS*VWQK*LVRILLVHIP 566
           VMA+RDRT EF + +RSLQ R + +   +RD RKA  +++Y    +  + + + +     
Sbjct: 157 VMAARDRTGEFANAIRSLQARNITRAVNIRDPRKAKQVQSYSEFMMVARFIGKNIASTYA 216

Query: 567 NWEKLALLA 593
             EKL +LA
Sbjct: 217 KLEKLTMLA 225



 Score = 35.5 bits (78), Expect = 0.074
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +2

Query: 497 VGNLSQFMSMAKVISKNITSTYTKLGKVSLVG*EENHYLMTVPPENSKN*PYII 658
           V + S+FM +A+ I KNI STY KL K++++  +++  L    P+  +   YII
Sbjct: 194 VQSYSEFMMVARFIGKNIASTYAKLEKLTMLAKKKS--LFDDRPQEIQELTYII 245


>X78219-1|CAA55064.1|  310|Drosophila melanogaster SED5 protein.
          Length = 310

 Score = 42.3 bits (95), Expect = 6e-04
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = +3

Query: 393 MASRDRTSEFISTVRSLQGRFLNKP-TVRDDRKAAVLETYPNS*VWQK*LVRILLVHIPN 569
           MA+RDRT EF + +RSLQ R + +   +RD RKA  +++Y    +  + + + +      
Sbjct: 1   MAARDRTGEFANAIRSLQARNITRAVNIRDPRKAKQVQSYSEFMMVARFIGKNIASTYAK 60

Query: 570 WEKLALLA 593
            EKL +LA
Sbjct: 61  LEKLTMLA 68



 Score = 35.5 bits (78), Expect = 0.074
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = +2

Query: 497 VGNLSQFMSMAKVISKNITSTYTKLGKVSLVG*EENHYLMTVPPENSKN*PYII 658
           V + S+FM +A+ I KNI STY KL K++++  +++  L    P+  +   YII
Sbjct: 37  VQSYSEFMMVARFIGKNIASTYAKLEKLTMLAKKKS--LFDDRPQEIQELTYII 88


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,489,583
Number of Sequences: 53049
Number of extensions: 528592
Number of successful extensions: 1022
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3252477558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)