Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30391
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    30   1.5  
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    29   2.6  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
 Frame = -1

Query: 567 LVYVLVIFL-LITFAILMNWDKFPTQQLFYHLLRLVCLRNVLGDCVQLK*IHLFYLLKP* 391
           +V+ L+  L L+ F  L  W +  +  L + + ++  L +++     +  + L+      
Sbjct: 178 VVFSLIETLSLLLFIRLYIWKR--SSHLLHKVTQIALLDSLMLLLFNISPLLLYSYFSST 235

Query: 390 LVQKQILLKI*TRPGQMI*ESMLIWNLMSSRKAAIPRNEHLSYL 259
           LV+    L   +R      ES+++W L+SS+K   P N  LS L
Sbjct: 236 LVRVNYPLITVSRNAGSAIESVILWKLLSSKKKVSPNNIRLSNL 279


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 27/109 (24%), Positives = 53/109 (48%)
 Frame = +3

Query: 114 ECTMKVRNYLNAIGFLSED*RLQCDASSKAKYRRYRKTLGNRNGFIQKLDKKGVHYGESR 293
           ECT + + Y+N +  + E+   +    +K +    +KTL ++N  I+ L K+ +    S+
Sbjct: 98  ECT-EFKTYMNNMKSVLEETLEEEKEKNKKRDEASKKTLNSKNEEIEHLKKRVISLSNSQ 156

Query: 294 PYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRS 440
               +  SK + + +S      K L+E     V  SR++ SE +S + +
Sbjct: 157 SENETMKSKISKLTESE-----KKLKE-TNGKVTKSRNQLSERVSELEA 199


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +3

Query: 282 GESRPYENSSNSKST--LILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQGRF 455
           G++ P E SS+S ++  L   +       F   FVF   +  R  +S  +ST  S     
Sbjct: 508 GKTTPLETSSSSSTSQRLTTTTKSSTTSPFATRFVFSTRVTFRPVSSTVVSTKSSTTSST 567

Query: 456 LNKPT 470
             KPT
Sbjct: 568 TTKPT 572


>Z77663-7|CAB01206.1|  856|Caenorhabditis elegans Hypothetical
           protein F53F4.8 protein.
          Length = 856

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 685 DLKNLKPPLNNIRLVLGIFWGDG 617
           +++NL P + N +++LG+ W DG
Sbjct: 404 NIQNLYPMVKNSKIMLGVVWPDG 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,251,608
Number of Sequences: 27780
Number of extensions: 298640
Number of successful extensions: 718
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)