Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30391
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.1  
M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.0  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.0  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.0  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 143 QIITYFHSTFMCVQYLSFHLIDSFQNSMIYLSFK 42
           +I TYF  T  C   L+FH I    N++  L+ +
Sbjct: 328 EISTYFTFTRPCGITLTFHEILKRANTLFVLTLQ 361


>M29493-1|AAA27728.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H90. ).
          Length = 74

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 178 YNAMLPRRRNIGVTERLLETE 240
           YN  L RRR I +   L  TE
Sbjct: 29  YNRYLTRRRRIEIAHALCLTE 49


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +1

Query: 178 YNAMLPRRRNIGVTERLLETE 240
           YN  L RRR I +   L  TE
Sbjct: 291 YNRYLTRRRRIEIAHALCLTE 311


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 384 EPVMASRDRTSEFISTVRSLQGRFL 458
           EP +  +  T EF+ST+  L  +F+
Sbjct: 21  EPSVMLKIWTEEFLSTILRLDPKFI 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,524
Number of Sequences: 438
Number of extensions: 3874
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)