Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30391
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53180.1 68414.m06027 expressed protein                             35   0.063
At5g44080.1 68418.m05393 bZIP transcription factor family protei...    30   1.8  
At5g06905.1 68418.m00780 cytochrome P450 family protein similar ...    29   3.1  
At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing...    27   9.6  

>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 34.7 bits (76), Expect = 0.063
 Identities = 24/74 (32%), Positives = 35/74 (47%)
 Frame = +3

Query: 267 KGVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQ 446
           +G+ Y  S PY +SS S ST   K  D D+ K LE      ++ +    S    +   L 
Sbjct: 30  RGLRYCHSDPYPSSS-STSTSPEKMGDSDIGKVLEASTGRSLIRASSIDSREGGSQTKLT 88

Query: 447 GRFLNKPTVRDDRK 488
           GRF  K  V++ R+
Sbjct: 89  GRFSEKIRVQEQRQ 102


>At5g44080.1 68418.m05393 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 315

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
 Frame = +3

Query: 174 RLQCDASSKAKYRRYRKTLGNRNGFIQKLDKKGVHYGESRPYENSSNSKSTLILKSSD-- 347
           R+  +   KA  +R R+ + NR    +  ++K  +  E          ++ L+ K  +  
Sbjct: 221 RVMVEPLDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKEIEDK 280

Query: 348 -QDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQ 446
            ++ ++ L EFV   V   + +   F+  +RSL+
Sbjct: 281 RKERYQKLMEFVIPVVEKPKQQPPRFLRRIRSLE 314


>At5g06905.1 68418.m00780 cytochrome P450 family protein similar to
           SP|Q42798|C931_SOYBN Cytochrome P450 93A1 (EC 1.14.-.-)
           {Glycine max}; contains Pfam profile PF00067: Cytochrome
           P450
          Length = 521

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = +3

Query: 273 VHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEFVFEPVMASRDRTSEFISTVRSLQGR 452
           +  G  R    S +  + LILK+ D D   F  +FVF P   +  + SEF +       R
Sbjct: 68  IRIGSLRVLVVSDSDTAKLILKTHDPD---FASKFVFGPRQFNVYKGSEFFNAPYGSYWR 124

Query: 453 FLNK 464
           F+ K
Sbjct: 125 FMKK 128


>At3g15970.1 68416.m02019 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein similar to
           Ran binding protein [Homo sapiens] GI:624232; contains
           Pfam profile PF00638: RanBP1 domain
          Length = 465

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 249 IQKLDKKGVHYGESRPYENSSNSKSTLILKSSDQDVFKFLEEF--VFEPVMASRDRTSEF 422
           + K+DKKG+ +       ++ +  STL LK  D  V   +EEF  V E    S+   +E 
Sbjct: 393 LAKMDKKGITFACVNSVSDAKDGLSTLALKFKDPTV---VEEFRAVIEEHKDSKPSVAEA 449

Query: 423 ISTVRSLQGRFLNKPTVRD 479
            + +++ +    N P+  D
Sbjct: 450 AAPLKTPE----NSPSAED 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,265,596
Number of Sequences: 28952
Number of extensions: 272622
Number of successful extensions: 594
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)