Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30390
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 149 2e-37
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 147 1e-36
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 126 2e-30
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 105 7e-24
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 91 2e-19
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 1.2
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 27 2.1
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 25 6.5
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 25 8.6
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 25 8.6
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 8.6
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 25 8.6
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 25 8.6
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 149 bits (362), Expect = 2e-37
Identities = 73/97 (75%), Positives = 81/97 (83%)
Frame = +2
Query: 254 ILIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNK 433
+LIQVFEGERA TKD NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K
Sbjct: 436 VLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGK 495
Query: 434 ENKITITNDKGRLSKEEIEPYG**GEKSRNEDDKQKG 544
KITITNDKGRLSKEEI+ EK + ED+ + G
Sbjct: 496 TQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESG 532
Score = 74.5 bits (175), Expect = 1e-14
Identities = 41/84 (48%), Positives = 43/84 (51%)
Frame = +3
Query: 3 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 182
FNGKE KSINPDE +L GD SE+ QD GIETAGGVMT L
Sbjct: 352 FNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAPLSMGIETAGGVMTPL 411
Query: 183 IKRNXXXXXXXXXXXXXYSDNQPG 254
IKRN YSDNQPG
Sbjct: 412 IKRNTTIPTKKSEIFSTYSDNQPG 435
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 147 bits (356), Expect = 1e-36
Identities = 72/95 (75%), Positives = 80/95 (84%)
Frame = +2
Query: 254 ILIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNK 433
+LIQVFEGERA TKD NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA+EK T K
Sbjct: 436 VLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEKGTGK 495
Query: 434 ENKITITNDKGRLSKEEIEPYG**GEKSRNEDDKQ 538
KITITNDKGRLSKEEI+ EK + ED+ +
Sbjct: 496 TQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAE 530
Score = 73.3 bits (172), Expect = 2e-14
Identities = 41/84 (48%), Positives = 43/84 (51%)
Frame = +3
Query: 3 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 182
FNGKE KSINPDE IL GD SE+ QD GIETAGGVMT L
Sbjct: 352 FNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPLSLGIETAGGVMTPL 411
Query: 183 IKRNXXXXXXXXXXXXXYSDNQPG 254
IKRN Y+DNQPG
Sbjct: 412 IKRNTTIPTKKSEVFSTYADNQPG 435
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 126 bits (305), Expect = 2e-30
Identities = 58/80 (72%), Positives = 70/80 (87%), Gaps = 1/80 (1%)
Frame = +2
Query: 254 ILIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKS-TN 430
+LIQV+EGER +TKDNNLLGKF+L GIPPAPRGVPQIEVTF++DANG+L VSA++KS
Sbjct: 465 VLIQVYEGERTLTKDNNLLGKFDLRGIPPAPRGVPQIEVTFEVDANGVLTVSAVDKSGKG 524
Query: 431 KENKITITNDKGRLSKEEIE 490
K K+ I NDKGRLS+E+IE
Sbjct: 525 KPEKLVIKNDKGRLSEEDIE 544
Score = 41.5 bits (93), Expect = 9e-05
Identities = 24/64 (37%), Positives = 31/64 (48%)
Frame = +3
Query: 3 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 182
F GK+ +K INPDE +L G++ + + GIET GGVMT L
Sbjct: 383 FFGKKASKGINPDEAVAYGAAVQAGVLSGEEGSD--NIVLLDVIPLTLGIETTGGVMTKL 440
Query: 183 IKRN 194
I RN
Sbjct: 441 IGRN 444
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 105 bits (251), Expect = 7e-24
Identities = 51/98 (52%), Positives = 70/98 (71%)
Frame = +2
Query: 248 TRILIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKST 427
T + I+VF+GER + +DN L+G F+LTGI PAP+G PQIEV+FD+DA+GI+NVSA +K+T
Sbjct: 477 TAVEIRVFQGERELVRDNKLIGNFQLTGIAPAPKGQPQIEVSFDVDADGIINVSARDKAT 536
Query: 428 NKENKITITNDKGRLSKEEIEPYG**GEKSRNEDDKQK 541
NK++ IT+ G L+ EIE EK R D +K
Sbjct: 537 NKDSSITVAGSSG-LTDSEIEAMVADAEKYRASDMARK 573
Score = 36.3 bits (80), Expect = 0.003
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +3
Query: 12 KELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKR 191
+E KS+NPDE +L G V+D GIET GGV T LI R
Sbjct: 402 REPAKSVNPDEAVAIGAAIQGGVLSG----HVKDLVLLDVTPLSLGIETLGGVFTRLINR 457
Query: 192 N 194
N
Sbjct: 458 N 458
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 90.6 bits (215), Expect = 2e-19
Identities = 42/94 (44%), Positives = 61/94 (64%)
Frame = +2
Query: 248 TRILIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKST 427
T + V++GER +N LG+F+LTGIPP PRG ++E TF++DANGIL V+A+EK+T
Sbjct: 439 TTVTFPVYQGERVNCAENEPLGEFQLTGIPPMPRGQAELEATFELDANGILKVTAVEKTT 498
Query: 428 NKENKITITNDKGRLSKEEIEPYG**GEKSRNED 529
+ I ITN G LS +I+ +K + +D
Sbjct: 499 GRSAHIEITNSVGHLSSTKIQEMIENADKFKQQD 532
Score = 35.1 bits (77), Expect = 0.008
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = +3
Query: 3 FNGKELNKSINPDEXXXXXXXXXXXIL-HGDKSEEVQDXXXXXXXXXXXGIETAGGVMTT 179
F+G+ LNKSINPDE +L + S++ QD G+ G V
Sbjct: 356 FDGRALNKSINPDEAVAYGAAVQAAVLTNKADSDKTQDLLLLDVVPLSLGVAMEGNVFGV 415
Query: 180 LIKRNXXXXXXXXXXXXXYSDNQ 248
+ RN +DNQ
Sbjct: 416 VCPRNTPIPTIKKRTFTTVADNQ 438
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.9 bits (59), Expect = 1.2
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +1
Query: 376 RHRCQRYPQRFRYREVHQQGEQDH--HYQRQRSSLQGRDRAVWLMRREVQKRG*QAKRRP 549
RHR R + R R G +D HY +R + RD + + RE ++R + RP
Sbjct: 17 RHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESDFRRHRESRERSYREDERP 76
Query: 550 SRPR 561
R R
Sbjct: 77 RRER 80
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -3
Query: 408 ETLRIPLASMSKVTSI*GTPRGAGGIPVSSNLPSKLLSLVIARSPS 271
E L PLA MS TSI G G GG P + + + + +SPS
Sbjct: 76 EVLVDPLADMSAGTSIMGNNFGFGGFPRMNRRQRRRMG-IFDQSPS 120
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 398 LNVSAIEKSTNKENKITITNDKGRLSKEEIEP 493
LNV +K N+IT T D S++E P
Sbjct: 10 LNVMKKKKPNESSNRITFTEDDSSSSEQEHAP 41
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 353 VPQIEVTFDIDANGILNVSAIEKSTNKENKITITN-DKGR 469
+P TF NG++N+S + ++ N E + DKGR
Sbjct: 122 IPVKRGTFIEFRNGMINISPVGRNANTEERNEFERFDKGR 161
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/32 (34%), Positives = 22/32 (68%)
Frame = +2
Query: 389 NGILNVSAIEKSTNKENKITITNDKGRLSKEE 484
+GIL+ + IEK +K K+ + N+ G++S ++
Sbjct: 154 DGILSFTVIEKVDDKNLKVRV-NNNGKISSKK 184
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 423 DFSIAETLRIPLASMSKVTSI*GTPRGAGGIPVSSNLPSKLLSLVIARS 277
+ S L IP+AS K S T G G S + P L++ + R+
Sbjct: 479 NLSRRNNLAIPIASRRKSVSAVNTLYGVGSSYTSESFPFSKLTVPVERN 527
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 383 DANGILNVSAIEKSTNKENKITITNDKGRLSKEE 484
D LNVS + S +E +T ++ R+ +EE
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREE 91
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +1
Query: 391 RYPQRFRYREVHQQGEQDHHYQRQRSS-LQGR 483
R P R +YRE H + + H R QGR
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGR 351
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,297,431
Number of Sequences: 5004
Number of extensions: 42945
Number of successful extensions: 160
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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