BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30390 (611 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 157 5e-39 SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 151 3e-37 SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 142 3e-34 SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 127 6e-30 SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 110 8e-25 SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 38 0.008 SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10 SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24 SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.32 SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7 SB_8849| Best HMM Match : F-box (HMM E-Value=0.86) 30 1.7 SB_26282| Best HMM Match : Tctex-1 (HMM E-Value=3.1e-14) 29 2.2 SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9 SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2 SB_37567| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2 SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11) 28 5.2 SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2 SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9 SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) 28 6.9 SB_2761| Best HMM Match : zf-TRAF (HMM E-Value=0.26) 28 6.9 SB_57061| Best HMM Match : Sec62 (HMM E-Value=0.27) 27 9.1 SB_19601| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1 SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1 SB_28335| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1 >SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) Length = 1097 Score = 157 bits (382), Expect = 5e-39 Identities = 76/96 (79%), Positives = 84/96 (87%) Frame = +2 Query: 254 ILIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNK 433 +LIQVFEGER+MT NNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSA++KST K Sbjct: 440 VLIQVFEGERSMTAHNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGK 499 Query: 434 ENKITITNDKGRLSKEEIEPYG**GEKSRNEDDKQK 541 ENKITITNDKGRLSKE+IE K + ED+KQ+ Sbjct: 500 ENKITITNDKGRLSKEDIERMVNEASKYKEEDEKQR 535 Score = 80.6 bits (190), Expect = 9e-16 Identities = 42/84 (50%), Positives = 45/84 (53%) Frame = +3 Query: 3 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 182 F GKELNKSINPDE ILHGDK + V+D GIETAGGVM+ L Sbjct: 356 FGGKELNKSINPDEAVAYGAAVQAAILHGDKDDTVKDLLLLDVAPLSMGIETAGGVMSVL 415 Query: 183 IKRNXXXXXXXXXXXXXYSDNQPG 254 IKRN YSDNQPG Sbjct: 416 IKRNSTIPTKQTQTFTTYSDNQPG 439 >SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 746 Score = 151 bits (367), Expect = 3e-37 Identities = 71/95 (74%), Positives = 84/95 (88%) Frame = +2 Query: 248 TRILIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKST 427 T +LIQV+EGER++TKDNNLLGKFEL+GIPPAPRGVPQI+VTFD+D+NGILNVSA++KST Sbjct: 530 TSVLIQVYEGERSLTKDNNLLGKFELSGIPPAPRGVPQIDVTFDVDSNGILNVSAVDKST 589 Query: 428 NKENKITITNDKGRLSKEEIEPYG**GEKSRNEDD 532 KENKITITNDKGRLSKE+IE EK + D+ Sbjct: 590 GKENKITITNDKGRLSKEDIERMVKEAEKFKAADE 624 Score = 79.4 bits (187), Expect = 2e-15 Identities = 42/82 (51%), Positives = 43/82 (52%) Frame = +3 Query: 3 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 182 FNGKELNKSINPDE ILHGDKSE QD G+ETAGGVMT Sbjct: 448 FNGKELNKSINPDEAVAYGAAVQAAILHGDKSEATQDLLLLDVAPLTLGLETAGGVMTAA 507 Query: 183 IKRNXXXXXXXXXXXXXYSDNQ 248 IKRN YSDNQ Sbjct: 508 IKRNTTIPTKQTQTFTTYSDNQ 529 Score = 27.5 bits (58), Expect = 9.1 Identities = 17/38 (44%), Positives = 22/38 (57%) Frame = +3 Query: 492 RMVNEARSPETRMTSKKETIQAKNCIGILLAFSMKFTM 605 RMV EA + + +E IQ+KN + AFSMK TM Sbjct: 611 RMVKEAEKFKAADEAVRERIQSKNSLE-SYAFSMKSTM 647 >SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) Length = 640 Score = 142 bits (343), Expect = 3e-34 Identities = 69/96 (71%), Positives = 80/96 (83%) Frame = +2 Query: 254 ILIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNK 433 + I+VFEGER +TK NNLLGKF+L+GIPPAPRGVPQIEVTFDIDANGILNVSA +KST K Sbjct: 439 VTIRVFEGERPLTKHNNLLGKFDLSGIPPAPRGVPQIEVTFDIDANGILNVSAKDKSTGK 498 Query: 434 ENKITITNDKGRLSKEEIEPYG**GEKSRNEDDKQK 541 ITITNDKGRLSKEEI+ EK ++ED+ Q+ Sbjct: 499 TGSITITNDKGRLSKEEIDRMINDAEKYKSEDEAQR 534 Score = 73.3 bits (172), Expect = 1e-13 Identities = 40/83 (48%), Positives = 44/83 (53%) Frame = +3 Query: 3 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 182 F+GK LNKSINPDE IL GDKS+EV+D GIETAG VMT L Sbjct: 355 FSGKSLNKSINPDEAVAYGAAVQAAILSGDKSDEVKDVLLVDVAPLSLGIETAGEVMTKL 414 Query: 183 IKRNXXXXXXXXXXXXXYSDNQP 251 I+RN YSDNQP Sbjct: 415 IERNARIPTKATQTFTTYSDNQP 437 >SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) Length = 1327 Score = 127 bits (307), Expect = 6e-30 Identities = 63/96 (65%), Positives = 73/96 (76%) Frame = +2 Query: 254 ILIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNK 433 + IQVFEGER MTKDN+ LGKF+L GIPPAPRGVPQIEVTF+ID NGIL VSA +K T Sbjct: 1133 VTIQVFEGERPMTKDNHPLGKFDLNGIPPAPRGVPQIEVTFEIDVNGILRVSAEDKGTGN 1192 Query: 434 ENKITITNDKGRLSKEEIEPYG**GEKSRNEDDKQK 541 + KITITND+ RL+ E+IE EK +ED K K Sbjct: 1193 KEKITITNDQNRLTPEDIERMVNDAEKFADEDKKTK 1228 Score = 45.2 bits (102), Expect = 4e-05 Identities = 28/82 (34%), Positives = 35/82 (42%) Frame = +3 Query: 3 FNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTL 182 F GKE ++ INPDE +L G+ E+ + GIET GGVMT L Sbjct: 1051 FEGKEPSRGINPDEAVAYGAAVQAGVLGGE--EDTGEVVLLDVNPLTLGIETVGGVMTKL 1108 Query: 183 IKRNXXXXXXXXXXXXXYSDNQ 248 I RN +DNQ Sbjct: 1109 ISRNTVIPTKKSQVFSTAADNQ 1130 >SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 766 Score = 110 bits (265), Expect = 8e-25 Identities = 59/98 (60%), Positives = 71/98 (72%) Frame = +2 Query: 248 TRILIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKST 427 T++ I+VF+GER M DN LLG+F+L GIPPAPRGVPQ+EVTFDIDANGI+NVSA +K T Sbjct: 242 TQVEIKVFQGEREMAIDNKLLGQFQLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDKGT 301 Query: 428 NKENKITITNDKGRLSKEEIEPYG**GEKSRNEDDKQK 541 +E +I I G LSK+ IE EK E DKQK Sbjct: 302 GREQQIVI-QSSGGLSKDAIENMIKEAEKYA-EADKQK 337 Score = 37.5 bits (83), Expect = 0.008 Identities = 23/62 (37%), Positives = 29/62 (46%) Frame = +3 Query: 9 GKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIK 188 G+ +K++NPDE +L GD V+D GIET GGV T LI Sbjct: 166 GRVPSKAVNPDEAVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVFTKLIT 221 Query: 189 RN 194 RN Sbjct: 222 RN 223 >SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) Length = 212 Score = 37.5 bits (83), Expect = 0.008 Identities = 23/62 (37%), Positives = 29/62 (46%) Frame = +3 Query: 9 GKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIK 188 G+ +K++NPDE +L GD V+D GIET GGV T LI Sbjct: 111 GRVPSKAVNPDEAVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVFTKLIT 166 Query: 189 RN 194 RN Sbjct: 167 RN 168 Score = 35.9 bits (79), Expect = 0.026 Identities = 15/26 (57%), Positives = 21/26 (80%) Frame = +2 Query: 248 TRILIQVFEGERAMTKDNNLLGKFEL 325 T++ I+VF+GER M DN LLG+F+L Sbjct: 187 TQVEIKVFQGEREMAIDNKLLGQFQL 212 >SB_7408| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 156 Score = 33.9 bits (74), Expect = 0.10 Identities = 20/58 (34%), Positives = 30/58 (51%) Frame = +1 Query: 388 QRYPQRFRYREVHQQGEQDHHYQRQRSSLQGRDRAVWLMRREVQKRG*QAKRRPSRPR 561 QR QR R R+ H+Q ++ QRQR + R R R+ ++R Q +R+ R R Sbjct: 36 QRQRQRQRQRQRHRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRLRQR 93 Score = 30.7 bits (66), Expect = 0.97 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = +1 Query: 388 QRYPQRFRYREVHQQGEQDHHYQRQRSSLQGRDRAVWLMRREVQKRG*QAKRRPSRPR 561 QR QR R+R+ +Q ++ QRQR + R R R+ ++R Q R+ R R Sbjct: 40 QRQRQRQRHRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRLRQRQRLR 97 Score = 30.3 bits (65), Expect = 1.3 Identities = 19/58 (32%), Positives = 28/58 (48%) Frame = +1 Query: 388 QRYPQRFRYREVHQQGEQDHHYQRQRSSLQGRDRAVWLMRREVQKRG*QAKRRPSRPR 561 QR+ QR R R+ +Q ++ QRQR + R R R+ + R Q R+ R R Sbjct: 46 QRHRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRQRLRQRQRLRQRQRQR 103 >SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 339 Score = 32.7 bits (71), Expect = 0.24 Identities = 16/74 (21%), Positives = 38/74 (51%) Frame = +2 Query: 266 VFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKI 445 +FE ++ + + + G EL PPA V ++E +F+ +G+++ + S+ +E K Sbjct: 125 IFEPRESVPRQSQVPGAMELLPPPPAVFNVNEVETSFEELKSGLMSSGNSDMSSLEELKE 184 Query: 446 TITNDKGRLSKEEI 487 +T ++ + + Sbjct: 185 CVTKKPSTVTDKHV 198 >SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 367 Score = 32.3 bits (70), Expect = 0.32 Identities = 12/52 (23%), Positives = 29/52 (55%) Frame = +1 Query: 370 HLRHRCQRYPQRFRYREVHQQGEQDHHYQRQRSSLQGRDRAVWLMRREVQKR 525 H +H+ ++ Q+ +Y++ HQ Q H Q+Q+ Q + + +++ Q++ Sbjct: 291 HQQHQLHQHQQQHQYQQQHQHQHQHQHQQQQQQQQQQQQQQQQQQQQQQQQQ 342 >SB_58981| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 794 Score = 29.9 bits (64), Expect = 1.7 Identities = 16/60 (26%), Positives = 31/60 (51%) Frame = +1 Query: 382 RCQRYPQRFRYREVHQQGEQDHHYQRQRSSLQGRDRAVWLMRREVQKRG*QAKRRPSRPR 561 RC+R ++ R RE ++ E++ +R+R + R+R R ++R + +R R R Sbjct: 203 RCERQREKERERERERERERERERERERERERERERERERERERERERERERERERERER 262 >SB_8849| Best HMM Match : F-box (HMM E-Value=0.86) Length = 1222 Score = 29.9 bits (64), Expect = 1.7 Identities = 15/45 (33%), Positives = 29/45 (64%) Frame = -1 Query: 203 DGSVTLDECGHDTSSSLNTEGKGCYIKQQQILHLLRLVTVQDSSL 69 DG+V LDE + +++SL++ G C + ++ + + TV++SSL Sbjct: 1160 DGAVLLDEWNYGSNASLSSCGSTC--SESRLSYFIGQDTVEESSL 1202 >SB_26282| Best HMM Match : Tctex-1 (HMM E-Value=3.1e-14) Length = 273 Score = 29.5 bits (63), Expect = 2.2 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = -1 Query: 149 TEGKGCYIKQQQILHLLRLVTVQDSSLDSCTISYGLVRVNRFVELLSIK 3 T G I+QQQ LRLVT Q + ++ + L ++ FV LL K Sbjct: 9 TAGAAVAIEQQQDSAYLRLVTPQRTETETYVVLCNLRQLQTFVSLLIAK 57 >SB_42043| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 259 Score = 28.7 bits (61), Expect = 3.9 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +1 Query: 382 RCQRYPQRFRYREVHQQGEQDHHYQRQRSSLQGRD 486 R QRY + + RE HQ+G HH R S + RD Sbjct: 134 RDQRY-RDYEDRERHQRGRDRHHRDRDDSGCRFRD 167 >SB_12106| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 218 Score = 28.3 bits (60), Expect = 5.2 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +1 Query: 409 RYREVHQQGEQDHHYQRQRSSLQGRDRAVWLMRREVQKRG*QAKRR 546 R+R+ HQ+ + H +RQR Q R R R + + Q +RR Sbjct: 160 RHRQKHQRRNRQKHQRRQRQEHQRRHRRQHQRRHRQKHQRRQHQRR 205 >SB_37567| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 278 Score = 28.3 bits (60), Expect = 5.2 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = -3 Query: 345 GAGGIPVSSNLPSKLLSLVIARSPSNTWM 259 G GG PV+S SKL++ VIA SN+++ Sbjct: 21 GRGGSPVTSRPGSKLINHVIASFQSNSFI 49 >SB_13005| Best HMM Match : PSI (HMM E-Value=2.9e-11) Length = 829 Score = 28.3 bits (60), Expect = 5.2 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +3 Query: 462 KVVSPRKRSSRMVNEARSPETRMTSKKETIQ 554 K+ R ++R +NEAR+P T ++TIQ Sbjct: 7 KIRKRRHANARQMNEARNPTQSFTINRQTIQ 37 >SB_529| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 127 Score = 28.3 bits (60), Expect = 5.2 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 9/63 (14%) Frame = +2 Query: 338 PAPRGVPQIEVTFDIDANGILN-VSAIEK------STNKENKITIT--NDKGRLSKEEIE 490 P GVP T D+NG LN + IE S ++ K+TI ND + IE Sbjct: 28 PKQNGVPSKTKTASKDSNGSLNKIKTIENAIEAPDSRSRSKKLTILHFNDVYNIEPRNIE 87 Query: 491 PYG 499 P G Sbjct: 88 PVG 90 >SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1937 Score = 27.9 bits (59), Expect = 6.9 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +1 Query: 421 VHQQGEQDHHYQRQRSSLQGRDRAVWLMRREV 516 VHQ G++D + ++QRS+ RA+W++ +V Sbjct: 1819 VHQNGDRDKNMEQQRSA---SSRALWVLIHKV 1847 >SB_25894| Best HMM Match : Coatomer_WDAD (HMM E-Value=0) Length = 1066 Score = 27.9 bits (59), Expect = 6.9 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +1 Query: 196 LPSPLNRLRHSPPTLITNP 252 LP N + H+PPT + NP Sbjct: 760 LPDTANEIEHAPPTTVINP 778 >SB_2761| Best HMM Match : zf-TRAF (HMM E-Value=0.26) Length = 436 Score = 27.9 bits (59), Expect = 6.9 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +1 Query: 349 WRASN*GHLRHRCQRYPQRFRYREVHQQGEQDHHYQRQRSSLQ 477 WR N GH++ R Q P +Y+ + + + H QR L+ Sbjct: 246 WRRQNHGHIQSRTQVQPSSQQYKTLPSE-QSSPHKMSQREPLK 287 >SB_57061| Best HMM Match : Sec62 (HMM E-Value=0.27) Length = 243 Score = 27.5 bits (58), Expect = 9.1 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 368 VTFDIDANGILNVSAIEKSTNKENKITITNDKGRLSKEEIEPYG 499 + DI+ N + I+K T K+NK T + R EE+E G Sbjct: 77 IVSDIEDNSYTS-KCIDKKTEKQNKNTSRRKRRREEIEEVEDVG 119 >SB_19601| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 374 Score = 27.5 bits (58), Expect = 9.1 Identities = 12/40 (30%), Positives = 22/40 (55%) Frame = +2 Query: 353 VPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRL 472 VP+I + D + I V + ++ +NKI ND+G++ Sbjct: 62 VPEITESIDFASGSIREVPSSTENKGNKNKILEKNDQGKM 101 >SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1384 Score = 27.5 bits (58), Expect = 9.1 Identities = 17/46 (36%), Positives = 22/46 (47%) Frame = -2 Query: 400 EDTVGIDVEGDLNLRHATRRRWDPGQLEFTEQVVIFGHSTLTLKYL 263 ED VGID EG+L++R R Q + T + TLK L Sbjct: 402 EDDVGIDDEGNLHIRSVGRFNEGTYQCKATRLAGASSTAAFTLKIL 447 >SB_28335| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1051 Score = 27.5 bits (58), Expect = 9.1 Identities = 13/49 (26%), Positives = 26/49 (53%) Frame = +1 Query: 379 HRCQRYPQRFRYREVHQQGEQDHHYQRQRSSLQGRDRAVWLMRREVQKR 525 +R + PQ F R QQ +Q + RQ + ++ R+R + +++ +R Sbjct: 33 NRSAQSPQHFNSRSNQQQQQQGNSIFRQATPIRQREREIEKEKQQAPER 81 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,880,920 Number of Sequences: 59808 Number of extensions: 358147 Number of successful extensions: 1168 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1013 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1151 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1499981500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -