Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30389
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    28   1.6  
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch...    27   2.7  
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   3.6  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.7  
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    26   6.3  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.3  
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos...    25   8.3  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   8.3  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   8.3  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   8.3  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   8.3  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    25   8.3  

>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 20/72 (27%), Positives = 35/72 (48%)
 Frame = +2

Query: 35  SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 214
           S SK+    +A S  +  ++ D P+ +T   S L+ F+T  +    +  + VLPS  D  
Sbjct: 26  SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81

Query: 215 TEKTQKSLFDGI 250
               +KS+ D +
Sbjct: 82  NITNKKSVTDNL 93


>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
           T-protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 536 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQ-IDLGRPLQVL 676
           HKG +  +E+++  Y+  VTRK I   + P +  + SQ I+   PL ++
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQVIEPSAPLSIV 263


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 219 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 88
           SV   + DG  +  +  +++RQ V+ P +  F +   +GR F+E
Sbjct: 86  SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 210 SPLRRPRSLYSTVSRV*FEPAEAHRDSGEEPASGQRRCRSGESPPEPLGR 359
           S L  P+S +S +      P+ A   +    +  Q+R R+ E P E   R
Sbjct: 117 STLSTPKSFHSPLQSRGISPSSAQSSAAVSSSRKQKRKRTSEGPSERRAR 166


>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 226 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 122
           G ++G  +S    +LFIGVD     G+  F   LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +3

Query: 387 EAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 482
           ++HD G   S + DR     + K++   +HRE
Sbjct: 720 QSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751


>SPBC409.12c |||nuclear telomere cap complex subunit
           Stn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 414 ILFFRRRVLHLSLVEVFNSVQEVL 343
           I++ + + LHL LV +FN   E++
Sbjct: 195 IIYLKAKELHLPLVHIFNVENEIV 218


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 228 WVFSVATSSADGSTIFSLVSTSRRQL 151
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 228 WVFSVATSSADGSTIFSLVSTSRRQL 151
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 228 WVFSVATSSADGSTIFSLVSTSRRQL 151
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 228 WVFSVATSSADGSTIFSLVSTSRRQL 151
           W+FSVA S      IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 231 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 133
           FW +S+  S   G  I SL +   RQ + +PSS
Sbjct: 83  FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,974,353
Number of Sequences: 5004
Number of extensions: 60173
Number of successful extensions: 236
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)