Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30389
(724 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1016 + 13228113-13228964 32 0.53
06_01_0766 - 5729550-5731057,5731248-5731515 31 0.93
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369... 31 1.2
06_02_0203 + 12986685-12988691 31 1.2
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 31 1.2
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798... 30 2.1
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699... 30 2.1
09_04_0329 + 16726501-16726750,16726843-16726930,16727280-167273... 29 2.8
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222 29 3.7
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 29 3.7
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 29 4.9
04_04_0057 + 22410167-22411330 29 4.9
01_06_0241 - 27813076-27813622,27813695-27814125 29 4.9
05_01_0567 - 4967373-4967675,4968023-4968083,4968217-4968284,496... 28 6.5
02_04_0650 + 24728700-24728725,24729582-24729660,24729802-247298... 28 6.5
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 28 6.5
11_06_0021 + 19314211-19314311,19315202-19315307,19317135-193174... 28 8.6
08_01_0434 + 3809681-3810016,3810039-3811100 28 8.6
06_02_0315 - 14230234-14232771 28 8.6
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 28 8.6
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 28 8.6
02_03_0171 + 15945591-15945681,15947068-15947138,15947715-159478... 28 8.6
>03_02_1016 + 13228113-13228964
Length = 283
Score = 31.9 bits (69), Expect = 0.53
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +3
Query: 264 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHD 398
E A AH +G + A+ RRC SG P P RS T HD
Sbjct: 214 EAARAHASNGGKHAAA-RRCSSGNHQPVPRARSTTGMDSLGHGHD 257
>06_01_0766 - 5729550-5731057,5731248-5731515
Length = 591
Score = 31.1 bits (67), Expect = 0.93
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = +3
Query: 396 DDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAQETCEKNSLPTKDVIEQEKS 566
DDG S YR G+E P +LR H E Q C + D +E+ +S
Sbjct: 117 DDGSCHSRYQSAMYRRNAGREPSPHLVSKLRRH-EELQRRCGPGTAAYSDAVERLRS 172
>09_02_0057 -
3697255-3698116,3698191-3698351,3698442-3698636,
3698728-3699126,3699208-3699477,3700102-3700695
Length = 826
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 7/83 (8%)
Frame = +3
Query: 264 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGR----S*TLRQDSDEAHDDGRKESTAPDR 431
E R G G+R ESPP P + S +DS E D +E+ P
Sbjct: 60 EEESRSRRHGHHRDGGRRSLSPSESPPPPAAKRERSSSRAPRDSVERRDSADREAPPPSS 119
Query: 432 SYRSGE---GKEQIPERHRELRS 491
R G G E PE + R+
Sbjct: 120 RKRKGHEGGGNESDPEGGKRARA 142
>06_02_0203 + 12986685-12988691
Length = 668
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Frame = +1
Query: 244 RYREFDSSQLKHTETQEKN---PLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 402
++++ D ++ T T + P+P+ + +AA++AH N G EH K + TTT
Sbjct: 483 KFKKADHAEPPATTTLDAEAAMPVPNSNAIAADEAHGNATAG-EHDKKETAEQTTT 537
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Frame = +3
Query: 273 EAHRDSGEEPASGQRR--CRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 446
E+ +SG+EP + + SG + P P + D + DD ES+ D +
Sbjct: 328 ESSEESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDESDEDDSSDESSDEDVKQKQT 387
Query: 447 EGKE-QIPERHRELRSH*AEAQETCEKNSLPTK 542
+ K+ Q P S + +++ ++ P K
Sbjct: 388 QAKKVQAPVAQESSSSDESSEEDSDMESDEPAK 420
>09_04_0087 +
14476539-14476675,14478876-14479635,14479720-14479871,
14479958-14480024,14480632-14480831,14480915-14481068,
14481585-14481669,14481766-14481857,14482575-14482766,
14482867-14482992,14483072-14483125,14483494-14483550,
14484509-14484606,14484703-14485038,14485116-14485203,
14486891-14487016,14487082-14487138,14488054-14488133,
14488228-14488270,14488948-14489034,14489331-14489420,
14489996-14490054,14490141-14490231,14490330-14490495,
14490662-14490755,14491787-14492909
Length = 1537
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Frame = +3
Query: 264 EPAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRS 443
E E H ++GE+ +C P + + + A ++E T D
Sbjct: 149 ENGEKHEENGEKQNENGEKCEENGGKPAQISDDQAVNGCNGSADKKDKEEETEKDNEKEK 208
Query: 444 GEGKEQIP---ERHRELRSH*AEAQETCEKNSLPTKDVIEQEK 563
+ +E+ E+ +E + + EK L D E+EK
Sbjct: 209 EDKEEETEKDNEKEKEDKEEETKKDNEKEKEQLMGTDEKEKEK 251
>07_03_1577 -
27869596-27869682,27869769-27869869,27869956-27869995,
27870879-27870953
Length = 100
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +2
Query: 119 DLKSQLEGFNTSCLRDVDTNEKIVL 193
DL+S+L+ NT CL + + N+K+++
Sbjct: 54 DLQSKLDAVNTECLAEKEKNKKLII 78
>09_04_0329 +
16726501-16726750,16726843-16726930,16727280-16727333,
16727590-16727739,16727884-16728015,16728279-16728423,
16728514-16728552,16728638-16728712,16728935-16728994,
16729120-16729184,16729519-16729609,16729806-16729820
Length = 387
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 358 RPRGSGGLSPLRQRLCPEAGSSPESRCASAG 266
R RG+ G+ LR L P A +SP ++ A+ G
Sbjct: 54 RRRGAHGVRALRPLLLPRASASPSAKTAAGG 84
>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
Length = 212
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 126 RVSSKASTPAVSVTSTPMKRLCFR 197
+VSS++S+P SVT+ ++ +CFR
Sbjct: 72 QVSSQSSSPVESVTTATLRPICFR 95
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 81 TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 173
TLPP + SP SP T SSK TP+ S S+
Sbjct: 31 TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Frame = +3
Query: 102 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPL----RRPRSLYSTVSRV*FEP 269
SP + SS P +++ + P R + PL R R + V+R+ EP
Sbjct: 10 SPEANTLSPTSSPLPLPPITIHAPPFTRALHHAASSFPLLSQHRSHRWKGAAVARIGIEP 69
Query: 270 AEAHRDSGEEPAS 308
A R EEP S
Sbjct: 70 AMGRRQQPEEPDS 82
>04_04_0057 + 22410167-22411330
Length = 387
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/85 (24%), Positives = 29/85 (34%)
Frame = +3
Query: 267 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 446
P A + P R S PP P + + D++ +D RKE RS
Sbjct: 187 PPPAAAAASPSPERSPRCQPSPPPPPPPHALVIPVEDEEDDSDEDDRKEEAVELEMLRSE 246
Query: 447 EGKEQIPERHRELRSH*AEAQETCE 521
++P H S A A E
Sbjct: 247 RRAARLPRSHSTGHSLVASAAAAAE 271
>01_06_0241 - 27813076-27813622,27813695-27814125
Length = 325
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 372 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH 494
R + + H+ ++S +RS+R+ ++ + HR RSH
Sbjct: 21 RVEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSH 61
>05_01_0567 -
4967373-4967675,4968023-4968083,4968217-4968284,
4968390-4968425,4968553-4968726,4968983-4969023,
4969138-4969187,4969300-4969388,4969490-4969564,
4969684-4969772,4971320-4971434
Length = 366
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = -2
Query: 510 PVLQLSGIEVLDAVQEFVLFLLRFDSFDRGQWILFFRRRVLHLSLVEVFNSVQE 349
P++Q+S + FVLFL+ F F G I++F + + FN +E
Sbjct: 184 PLVQVSDSYFWFSRPTFVLFLIHFTLFQNGFQIIYFLWILYEYGMDSCFNDSKE 237
>02_04_0650 +
24728700-24728725,24729582-24729660,24729802-24729889,
24730216-24730297,24731083-24731278,24731432-24731816,
24733332-24734428,24734621-24734886,24735565-24735631,
24735722-24735772,24736033-24736123,24736239-24736345
Length = 844
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -1
Query: 640 YINIKIRRY*RDTFASNCYKVVVQADFSCSMTSFVGSEF 524
Y+NI + R D S+C++ + C+ + G EF
Sbjct: 520 YVNISLARIGDDNCCSDCFRDCLAQSLPCACAAETGGEF 558
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +3
Query: 339 PPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPER 473
PP P GR RQ + DG+ + D S RS +G P++
Sbjct: 89 PPPPRGRRRVTRQFWNAGDYDGKPDLLGGDPSLRSDDGGGMDPDK 133
>11_06_0021 +
19314211-19314311,19315202-19315307,19317135-19317412,
19318587-19318692,19318812-19319159,19319237-19319313,
19319392-19319516,19319884-19320135,19320314-19320336
Length = 471
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 273 EAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDE 389
E+H+DSG++ + +R R +S + S R DSDE
Sbjct: 213 ESHKDSGQKTSKNSKRARQ-DSDTSEINDSHCERGDSDE 250
>08_01_0434 + 3809681-3810016,3810039-3811100
Length = 465
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = +3
Query: 276 AHRDSGEEPASGQRRCRSGESPPEPLGR 359
A GE G+RR R G SPPEP R
Sbjct: 58 ASSGGGEAGERGRRRGRLGFSPPEPPAR 85
>06_02_0315 - 14230234-14232771
Length = 845
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 375 QDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAQETCEK 524
+++ E+HDDG++E+T D + Q+ E+ ++ EAQ+ E+
Sbjct: 629 EETLESHDDGKEEATL-DGQEEGTTQETQVDEKGEKVEVGGVEAQDVVEE 677
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 253 EFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEK 411
++D + ++ E QEK K + K ++ VE K +M HT+ ++
Sbjct: 262 KYDMKKKEYKEAQEKEKTEKKKMEEVAKIWEDSKGPVEELKKKKMSHTSNTKR 314
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 95 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 187
K+L + DLKS+LEG+NT D++ + +
Sbjct: 266 KELDERRHDLKSELEGYNTGDSDDINKKKAL 296
>02_03_0171 +
15945591-15945681,15947068-15947138,15947715-15947817,
15948189-15948328,15948535-15948693,15948775-15948878,
15950373-15950548,15952643-15952832,15953704-15953803,
15954171-15954339,15954908-15954990,15955073-15955149,
15955386-15955557
Length = 544
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 95 KDLPKVATDLKSQLEGFNTSCLRDVDTNEKI 187
K+L + DLKS+LEG+NT D++ + +
Sbjct: 88 KELDERMHDLKSELEGYNTGDSDDINKKKAL 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,922,127
Number of Sequences: 37544
Number of extensions: 430646
Number of successful extensions: 1485
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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