Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30389
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    58   8e-09
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    33   0.16 
Z93383-3|CAB07625.1|  309|Caenorhabditis elegans Hypothetical pr...    32   0.48 
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    30   1.5  
L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans chrom...    29   2.5  
U11279-2|AAW88400.1|  714|Caenorhabditis elegans Sensory axon gu...    29   4.4  
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu...    29   4.4  
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.      29   4.4  
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    29   4.4  
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr...    28   5.9  
AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical...    28   5.9  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical...    28   7.8  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 32/102 (31%), Positives = 47/102 (46%)
 Frame = +1

Query: 268 QLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNPLXXXXXXXXX 447
           +LK  ET EKN LP K+ VA EK H   +  +EHFD T++  T  +EK  L         
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 448 XXXNKFLNGIENFDPTKLKHRKRARRTRSPQRTSLSKRNQLE 573
               +  + I NF    LK  +   +   P  T +++   L+
Sbjct: 83  KQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQ 124



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/61 (39%), Positives = 31/61 (50%)
 Frame = +1

Query: 238 IRRYREFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTTEEKNP 417
           I     FDS++L  T  +EK  LP  D +  EK H  L D + +F    +K T T EKN 
Sbjct: 51  IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110

Query: 418 L 420
           L
Sbjct: 111 L 111



 Score = 36.3 bits (80), Expect = 0.022
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 131 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIES 256
           ++E F+++ L      EKIVLPSA+D+  EK    L D I +
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINN 94



 Score = 35.9 bits (79), Expect = 0.029
 Identities = 22/53 (41%), Positives = 25/53 (47%)
 Frame = +1

Query: 244 RYREFDSSQLKHTETQEKNPLPDKDVVAAEKAHQNLLDGVEHFDKTQMKHTTT 402
           +   F S  LK TET EKN LP    VA EK     L     FDK+ + H  T
Sbjct: 91  KINNFPSENLKKTETIEKNVLPSPTDVAREKT----LQMAASFDKSALHHVET 139



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 89  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE 253
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK        IE
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIE 55



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +2

Query: 86  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 226
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
 Frame = +3

Query: 282 RDSGEEPASGQRRCRSGESPPEPLGRS*TLR-QDSDEAHDDGRKESTAPDRSYRSGEGKE 458
           +D   +    +R+ +   S  +  GR  +   +    + D  R    +P+RS RS E + 
Sbjct: 233 KDKNRKKEKTERKRKRSHSSSDRRGRRTSKESRRRSRSRDTHRTRRRSPERSRRSTETRN 292

Query: 459 QIPERHRELRSH*AEAQE--TCEKNSLPTKDVIEQEK 563
           + PER    RS   E +E  +  +    +++VI++EK
Sbjct: 293 ERPERPSRWRSRSRERKEYDSYRRRRSRSREVIDKEK 329


>Z93383-3|CAB07625.1|  309|Caenorhabditis elegans Hypothetical
           protein F54B8.3 protein.
          Length = 309

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
 Frame = -2

Query: 516 TFPVLQLSGIEVLDAVQEFVLFLLRFDSFDRGQWILFFRR-----RVLHLSLVEVFNSVQ 352
           TF V+ L+ ++V  A++    F    ++ DR Q I +F+R       LH+  VE++NS  
Sbjct: 98  TFLVIALNDLKV--ALKHVSCFAYVDNTLDRYQNITYFKRFLKSEETLHVEEVEIWNSYV 155

Query: 351 EVLVGFLRC 325
           + ++  LRC
Sbjct: 156 DDVMTILRC 164


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
 Frame = +3

Query: 132 SSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRV*FEPAEAHRDSGEEPA 305
           SS AS  A SVT T ++ +  + +  KT P  R +SL    +     PA+  +   EEP 
Sbjct: 251 SSIASYSAESVTETALESVNTKSVESKTRPSSRRKSLILGAASPLKSPAKIEKPRLEEPE 310

Query: 306 SGQRRCRS----GESPPEPLGRS*TLRQDSDEAHDDGRKESTAP 425
              +R R          EP  +S  L +D  E     ++E+  P
Sbjct: 311 QKSKRSRRSLRLNPDAIEPPVKSCDLLEDEREESSSKKRENHDP 354


>L13200-3|AAA28192.1|  304|Caenorhabditis elegans C.elegans
           chromodomain proteinprotein 1 protein.
          Length = 304

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
 Frame = +3

Query: 378 DSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAQET---CEKNSLPTKDV 548
           D+DE H    K+S A D      + +E +P++ +E++    E +      E+ S   +D+
Sbjct: 127 DTDEEHSSADKKSKAEDEE-EVEDDEEPVPKKKKEVQEEPEEEESVEGEDEEESQEVEDL 185

Query: 549 IEQEK 563
            E EK
Sbjct: 186 KEDEK 190


>U11279-2|AAW88400.1|  714|Caenorhabditis elegans Sensory axon
           guidance protein 2,isoform b protein.
          Length = 714

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 438 RSGEGKEQIPERHRELRSH*AEAQETCEKNSLPTK---DVIEQE 560
           + GE +E+ PE   E  SH  E +E  E + LP K   D +E+E
Sbjct: 217 QGGEEEEEEPEEDEESESH--EEEENSESDDLPRKVEDDDLEEE 258


>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
            guidance protein 2,isoform a protein.
          Length = 2886

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 438  RSGEGKEQIPERHRELRSH*AEAQETCEKNSLPTK---DVIEQE 560
            + GE +E+ PE   E  SH  E +E  E + LP K   D +E+E
Sbjct: 2389 QGGEEEEEEPEEDEESESH--EEEENSESDDLPRKVEDDDLEEE 2430


>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
          Length = 2914

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 438  RSGEGKEQIPERHRELRSH*AEAQETCEKNSLPTK---DVIEQE 560
            + GE +E+ PE   E  SH  E +E  E + LP K   D +E+E
Sbjct: 2417 QGGEEEEEEPEEDEESESH--EEEENSESDDLPRKVEDDDLEEE 2458


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 273  EAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKE 413
            E   +  E+    +   R  E  PEPL R      D DE  DDG ++
Sbjct: 2493 EDEEEEAEDDDQDEDDVRHVEQNPEPLARRLFEEDDDDEEDDDGDED 2539


>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
           translation initiationfactor eIF5B protein.
          Length = 1074

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
 Frame = +3

Query: 294 EEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGR-----------KESTAPDRSYR 440
           E+ AS Q+     E P +P  ++    +D DE   D             +ES++ D   R
Sbjct: 393 EDEASAQK-----EKPKKPATKASDADEDDDEESSDEESDEESEDSEESEESSSDDDEDR 447

Query: 441 SGEGKEQIPERHRELRSH*AEAQETCEKN 527
            G+ KE + ER   ++   A+ +E  + N
Sbjct: 448 GGQQKETVEERMERIKLRIAKRKEVAQAN 476


>AC026301-10|AAK68893.1| 1173|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.2 protein.
          Length = 1173

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
 Frame = +3

Query: 294 EEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGR-----------KESTAPDRSYR 440
           E+ AS Q+     E P +P  ++    +D DE   D             +ES++ D   R
Sbjct: 393 EDEASAQK-----EKPKKPATKASDADEDDDEESSDEESDEESEDSEESEESSSDDDEDR 447

Query: 441 SGEGKEQIPERHRELRSH*AEAQETCEKN 527
            G+ KE + ER   ++   A+ +E  + N
Sbjct: 448 GGQQKETVEERMERIKLRIAKRKEVAQAN 476


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +3

Query: 24  FYPLPHQKYIDSEWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 203
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P ++      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 204 KTSPLRR 224
             +P+++
Sbjct: 76  TVTPIQQ 82


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 30/131 (22%), Positives = 50/131 (38%)
 Frame = +3

Query: 87  PP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSRV*FE 266
           P  + SP + ++   + +  +P+ S +  P +         +P RR RS  ++ S     
Sbjct: 302 PRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPP-A 360

Query: 267 PAEAHRDSGEEPASGQRRCRSGESPPEPLGRS*TLRQDSDEAHDDGRKESTAPDRSYRSG 446
           P  A   S   PA  +R   + +SPP P       R+   ++     K    P R  RS 
Sbjct: 361 PKRAKSRSKSPPARRRRSPSASKSPPAP-----RRRRSPSKSRSPAPKREIPPARRRRSP 415

Query: 447 EGKEQIPERHR 479
              +  P   R
Sbjct: 416 SASKSPPAPKR 426


>AF078790-14|AAC26930.1|  335|Caenorhabditis elegans Hypothetical
           protein F36H12.3 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 372 RQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRELRSH*AEAQETCEKNSLPTKD 545
           + D+ +  DD +KE    D+  +  E KE+  E  +E +    + +E  E+     K+
Sbjct: 154 KSDNKDDKDDEKKEEKKDDKEEKKEEKKEEKKEEKKEEKKEEKKEEEKKEEKKEEKKE 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,531,536
Number of Sequences: 27780
Number of extensions: 347838
Number of successful extensions: 1280
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)