Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30386
         (713 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q06194 Cluster: Coagulation factor VIII precursor; n=6;...    33   5.3  
UniRef50_A3DNB0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  

>UniRef50_Q06194 Cluster: Coagulation factor VIII precursor; n=6;
            Euarchontoglires|Rep: Coagulation factor VIII precursor -
            Mus musculus (Mouse)
          Length = 2319

 Score = 33.5 bits (73), Expect = 5.3
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -2

Query: 457  LNKSDTYFKANKSITK*N-TYAHNTNNDRRHT 365
            L K +T FK N S+ K N TY H+T N++ HT
Sbjct: 1005 LTKDNTLFKDNVSLMKTNKTYNHSTTNEKLHT 1036


>UniRef50_A3DNB0 Cluster: Putative uncharacterized protein; n=1;
           Staphylothermus marinus F1|Rep: Putative uncharacterized
           protein - Staphylothermus marinus (strain ATCC 43588 /
           DSM 3639 / F1)
          Length = 645

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 21/76 (27%), Positives = 37/76 (48%)
 Frame = -1

Query: 233 KEKSKLVNKIFLTSQSRRVHLIDKRSSDSANKISPVFRYVFSVSDLLDQLI*RLSTFFLW 54
           ++K +LV      S   ++ ++ +    +   +S +FRY  S SD+LD +  R +   L 
Sbjct: 77  EKKYRLVEDETKISYDSKMSILRRIHGKNKITVSEIFRYSASSSDILDYIWLRKNKLLLR 136

Query: 53  GRIKSLVYNTQTISAE 6
           GR   LV N +  S +
Sbjct: 137 GRDGKLVINKRIYSKQ 152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,354,087
Number of Sequences: 1657284
Number of extensions: 9734468
Number of successful extensions: 21300
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21297
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)