Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30386
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    26   6.1  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    26   6.1  
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    26   6.1  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    26   6.1  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 611 WYIKNNQNRSRFPIPEQITFPGV 679
           W++K NQN  R+ I   +   GV
Sbjct: 111 WHVKVNQNEKRYAIASAVAASGV 133


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 124 NTGDILFALSLDLLSIRWTRRD*LVKNILLTSLDFSLITADATARIGI 267
           +TG+  F  S      R+TRRD L++++  T L  +L+T + T  + +
Sbjct: 26  HTGEKPFECSYPSCKKRFTRRDELIRHV-RTHLRKALVTPEQTLDVNL 72


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 611 WYIKNNQNRSRFPIPEQITFPGV 679
           W++K NQN  R+ I   +   GV
Sbjct: 111 WHVKVNQNEKRYAISSAVAASGV 133


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 616 HKKQSKSIQIPDSGTNYLSRG 678
           HKK  ++I + +SGT ++S G
Sbjct: 58  HKKSCRNISVNESGTEFISVG 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,523,707
Number of Sequences: 5004
Number of extensions: 43761
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)