Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30386
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0749 + 5599238-5600128                                           30   1.6  
07_01_0935 + 7905748-7905765,7906071-7906096,7906142-7906166,790...    29   4.8  
08_02_0716 + 20364848-20364978,20365011-20365230                       28   8.5  

>06_01_0749 + 5599238-5600128
          Length = 296

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 422 VYYKIKYLRTQYQQRPPAHSNTTIHKRKPR 333
           VYYK+K  ++++   PP  + TT H R+ R
Sbjct: 145 VYYKLKRNKSKFLHAPPQATTTTPHDRRVR 174


>07_01_0935 +
           7905748-7905765,7906071-7906096,7906142-7906166,
           7906891-7907700,7907803-7907934,7908102-7908470,
           7908540-7908671,7909135-7909662
          Length = 679

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 273 AVYYKNIKPTKERDSNYFCITWFSFMYCSV 362
           A+ + + +P    D +Y C  W S+ YC V
Sbjct: 392 AISHTSPQPVDRSDLSYICFKWSSYGYCLV 421


>08_02_0716 + 20364848-20364978,20365011-20365230
          Length = 116

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 294 KPTKERDSNYFCITWFSFMYCSVAVCRRSLL 386
           +P    D +Y C  W S+ YC V   R S++
Sbjct: 72  QPVDRSDLSYICFKWSSYDYCLVLDQRCSVI 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,527,574
Number of Sequences: 37544
Number of extensions: 253065
Number of successful extensions: 442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)