Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30386
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          29   2.8  
SB_12333| Best HMM Match : Acyl_transf_3 (HMM E-Value=6)               28   6.5  
SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27)             28   8.6  

>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +2

Query: 485 DISFLKVLYPDLRSIFVSMNCLASCVG*L*FT*F*LNFRKKIWY--IKNNQNRSRFPIPE 658
           D+S  ++ +PD     +  N    C+  +  T   + F K +WY  +KN++NR+ FP  E
Sbjct: 740 DVSNARLFFPDFADN-MGWNIAVCCLYFVAMTV--IKFTKHLWYGNLKNDKNRAVFPNKE 796

Query: 659 QI 664
           ++
Sbjct: 797 KL 798


>SB_12333| Best HMM Match : Acyl_transf_3 (HMM E-Value=6)
          Length = 303

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +3

Query: 270 PAVYYKNIKPTKERDSNYFCITWFSFMYCSVAVC---RRSLLVLCA*VFYFVI 419
           P  +Y+           YF + W S +Y  V  C   R++L +L + + YF++
Sbjct: 159 PCSFYRQALFILSSSLVYFMVKWSSLVYFIVKPCLFYRQALFILSSSLVYFIV 211


>SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27)
          Length = 396

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 427 NKSITK*NTYAHNTNNDRRHTATLQYIKE 341
           N +++K N  AH+ NN +RH  T    KE
Sbjct: 286 NNNVSKENPEAHSVNNTKRHYDTSPSTKE 314


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,361,069
Number of Sequences: 59808
Number of extensions: 295668
Number of successful extensions: 608
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)