Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30386
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical...    30   1.4  
AF025463-2|AAB71006.1|  387|Caenorhabditis elegans Serpentine re...    30   1.9  
Z99281-2|CAB16506.2|  224|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical protein
            F15D4.7 protein.
          Length = 2268

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 422  VYYKIKYLRTQYQQRPPA-HSNTTIHKRKPRNTKIITIP 309
            +Y    YL+ QY+ +PP     T+ +K KP N   +TIP
Sbjct: 1447 IYATTIYLQYQYKDKPPVIQLLTSKNKIKPANCNTLTIP 1485


>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
            protein F15D4.7 protein.
          Length = 2268

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 422  VYYKIKYLRTQYQQRPPA-HSNTTIHKRKPRNTKIITIP 309
            +Y    YL+ QY+ +PP     T+ +K KP N   +TIP
Sbjct: 1447 IYATTIYLQYQYKDKPPVIQLLTSKNKIKPANCNTLTIP 1485


>AF025463-2|AAB71006.1|  387|Caenorhabditis elegans Serpentine
           receptor, class t protein54 protein.
          Length = 387

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 205 ILLTSLDFSLITADATARIGISLPFIIRILSRRKKGIVIIFVLRGFLLCIVVLLCA 372
           + +TSL F LI      +     P  +R+ +     I +IF++ G LL ++ + C+
Sbjct: 6   LFMTSLSFFLINDMTPWKDAYECPANVRVFNETWPTIGVIFLVYGILLVVLNIFCS 61


>Z99281-2|CAB16506.2|  224|Caenorhabditis elegans Hypothetical
           protein Y57G11C.4 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 230 EKSKLVNKIFLTSQSRRVHLIDKRSSDSANKISPVFRYVFSVSDLLDQL 84
           EK   +    +TS+  RVH +   SSD A  +  + + +  V+DLLDQ+
Sbjct: 15  EKQYSLQTAEITSKIGRVHTLP--SSDRAGAVQEIRKSLEEVNDLLDQM 61


>U39745-6|AAA80448.2|  392|Caenorhabditis elegans Hypothetical
           protein F41C6.7 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 45  NSPPQKKSREASNQLI*EVTDRKDIAKYGRYFICTI 152
           N PPQ  SR  S   I ++T++K+ A+Y    I  +
Sbjct: 69  NLPPQSSSRAPSTLNILKMTNKKEFAEYAIMIIVNL 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,908,692
Number of Sequences: 27780
Number of extensions: 242585
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)