Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30383
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 2.4
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 2.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.1
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 4.2
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 5.5
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.5
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 25 7.3
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 9.6
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 25 9.6
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 9.6
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 15 GTRKSVSIPRKENNDKLPKKPEHLPIPRENLKSALY 122
GTR+S + + + D+ + EH PI RE Y
Sbjct: 121 GTRRSTRLRNRRSQDEEESEEEHRPILRERTSRINY 156
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 295 RRHEIDKNKKSDEVSGK-EQNEDEIKTKESKRAKRK 399
R E ++ + +S + E+NEDE T+ES KRK
Sbjct: 278 REEEAEETSDDEPLSSEDEENEDEDITEESNLRKRK 313
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 433 RYSHFQNLIDGLYV*LFWIPWFLFRPHS 350
++S QNL GL++ W W F P +
Sbjct: 2402 KFSELQNLSTGLHMQAIWDKWHAFVPRT 2429
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 307 IDKNKKSDEVSGKEQNEDEIKTKESKRAKRKAHQ 408
I+ N K ++ KE ED+++ ESK A KA +
Sbjct: 466 IEANDKDEKTDSKE-TEDKVEETESKEADVKAKE 498
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +1
Query: 319 KKSDEVSGKEQNEDEIKTKESKRAKRKA 402
KK ++++ K++ E + K KES KRK+
Sbjct: 190 KKLEKITKKKKKEHKKKDKESSSKKRKS 217
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 5.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 176 FNDGKTQSDHTDDEEKEDIVNIPNLRDTQKVFHALHHRSCEDMKLTKI 319
F + K +S DD EK +N+ N K+ + H + M+L K+
Sbjct: 743 FEERKIRSGSNDDIEKNKEINVLNSELADKLAQ-IRHLESDKMELDKL 789
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = +2
Query: 155 EKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLRDTQKVFHALHHRSCEDMK 307
E+PP E + + + ++EE+E+ + P + TQ+ A C+++K
Sbjct: 120 EEPPKEEAEEPQEGGEEEEEEEEEEEITDPLEKMTQECMDA---PDCKEVK 167
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1018
Score = 25.0 bits (52), Expect = 9.6
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Frame = +2
Query: 197 SDHTDDEEKEDIVNIPNLRDTQKVFHALHHRSCEDMKLTKIRNLMK-------FREKSRM 355
SD +DDE + VN+P+ ++ ++ L + D KI ++K FR K R
Sbjct: 927 SDDSDDEGNKKKVNLPSWAESPELREQLKRQQKWDP--DKIFGMIKPLQMDEYFRSKDRS 984
Query: 356 RTK*KPRN 379
+ + +PR+
Sbjct: 985 KIRFRPRS 992
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 69 KKPEHLPIPRENLKSALYLAQAENHQ*LLKNPHQN 173
++P H+ +P +NLKS LYL+ L+ H++
Sbjct: 275 EQPLHIVVPEKNLKS-LYLSSPGTFNILISINHRD 308
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 404 INQILKVRVARSYRNPKVSPK--SSVRRRVHLREIRNQKREL 523
+NQ+ K +A S + P PK S +++ V L ++ R L
Sbjct: 34 VNQMKKESLAASVKTPSTPPKECSHLKKGVKLSHLKGNARAL 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,237,100
Number of Sequences: 5004
Number of extensions: 40909
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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