Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30383
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809...    29   3.3  
12_01_1056 - 10892516-10892998                                         28   5.7  
09_04_0017 + 13821348-13823404,13823546-13823819,13823916-138242...    28   5.7  
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798     28   7.5  
03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434...    27   9.9  
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332...    27   9.9  

>04_04_1188 +
           31579833-31579914,31580001-31580176,31580822-31580923,
           31581015-31581245,31581821-31581922,31582092-31582184,
           31582275-31582379,31582455-31582514,31582621-31582698,
           31582778-31582924,31583011-31583109,31583178-31583267,
           31583360-31583451,31583529-31583646,31583783-31583871,
           31583998-31584088,31584203-31584294,31584442-31584749,
           31584866-31584897
          Length = 728

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 280 PSPFLRRHEIDKNKKSDEVSGKEQNEDE-IKTKESKRAKRKA 402
           PSP   + EI  + +SDE    +++ DE +K K+++  K +A
Sbjct: 353 PSPKATKKEISSDDESDEDDSSDESSDEDVKQKQTQAKKVQA 394


>12_01_1056 - 10892516-10892998
          Length = 160

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 419 KVRVARSYRNPKVSPKSSVRRRVHLREIRNQKRELF 526
           K+R  +   N  VS   + RR  H RE R   RE+F
Sbjct: 121 KIRRLKRMANADVSGYPAARREAHERETRRLAREIF 156


>09_04_0017 +
           13821348-13823404,13823546-13823819,13823916-13824238,
           13824491-13824604,13825357-13825422,13825638-13825764
          Length = 986

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 174 GSGGGFSTATDDSRLVLDIMRSLDSHAE*AGAQAF 70
           G GGG+  + D+  L+L +  SL +HA+ A    F
Sbjct: 91  GGGGGWEFSWDEDSLLLQLRDSLRAHADRADDMEF 125


>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
          Length = 289

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 262 KSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRK 399
           K   + P P  R+H+  K++K   VSG+ +     K K+ K + ++
Sbjct: 79  KPKRQPPEPKPRKHKGAKSEKPHRVSGEGEKPTPTKKKKKKESSKE 124


>03_06_0411 +
           33741903-33742163,33742990-33743168,33743342-33743426,
           33743506-33743822,33743983-33744106,33744810-33744902,
           33745296-33745364,33745654-33745704,33745705-33745854,
           33745904-33746125,33746413-33746568,33746716-33746823,
           33746992-33747126,33747209-33747364,33747544-33747664,
           33748182-33748267
          Length = 770

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 161 PPPEPFNDGKTQSDHTDDEEKE 226
           PPP P  D  +Q D  +DEE++
Sbjct: 420 PPPPPPQDQDSQEDQDEDEEED 441


>01_01_0447 -
           3327727-3328144,3328438-3328688,3328820-3328909,
           3329061-3329159,3329240-3329353,3329450-3329555,
           3329661-3329740,3329913-3330173,3330271-3330507,
           3330635-3330922
          Length = 647

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 296 EDMKLTKIRNLMKFREKSRMRTK*KPRNPKELNVKPINQILKVRVA-RSYRNPKVSPKSS 472
           +D+ +TKI+   K REK R +T    R  +EL ++P  +I K R A      PK      
Sbjct: 499 KDVDVTKIKYKDKAREKQRQKT--LKRKAEELALRP--EIEKRRKAPEKPEKPKRKKTGK 554

Query: 473 VRRRVHLRE 499
            R+ V  +E
Sbjct: 555 QRQAVQTKE 563


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,986,256
Number of Sequences: 37544
Number of extensions: 250121
Number of successful extensions: 937
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)