Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30383
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45146| Best HMM Match : DUF504 (HMM E-Value=9.8) 30 1.4
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 29 2.5
SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_17041| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_11062| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_44086| Best HMM Match : BTB (HMM E-Value=1.8e-23) 28 7.7
>SB_45146| Best HMM Match : DUF504 (HMM E-Value=9.8)
Length = 273
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/75 (22%), Positives = 35/75 (46%)
Frame = +2
Query: 254 DTQKVFHALHHRSCEDMKLTKIRNLMKFREKSRMRTK*KPRNPKELNVKPINQILKVRVA 433
+ +V +RS E ++T+++ L +R K R + + ++LK+R
Sbjct: 33 EVTRVLKLRGYRSYEGTEITRVQKLRGYRNYEEFMRVQKLREYRSYEGTEVMRVLKLRGY 92
Query: 434 RSYRNPKVSPKSSVR 478
RSY + +V+ +R
Sbjct: 93 RSYESTEVTRVQKLR 107
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 286 PFLRRHEIDKNKK-SDEVSGKEQNEDEIKTKESKRAKRKA 402
P++R H + + SDE +Q+++E+ K S R K+KA
Sbjct: 359 PYVRNHNNSRKRPFSDENGVSKQSDEEVTKKISNRQKKKA 398
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = +1
Query: 259 SKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQN----EDEIKTKESKRAKRK 399
SK S+ + E + K ++ KE+ E+E K KE KRAK+K
Sbjct: 441 SKDKSKNKGEKSKNKEEESKNKEEKSKNKEEESKNKEEESKNKEEKRAKKK 491
>SB_37663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1735
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 146 VAVEKPPPEPFNDGKTQSDHTDDEEKED 229
V +KPPP N+ K D+ DD+ +D
Sbjct: 457 VTSKKPPPRETNNNKAAKDNEDDDVTDD 484
>SB_36647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/35 (28%), Positives = 23/35 (65%)
Frame = +1
Query: 295 RRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRK 399
++ + K KK +E +E+NE+E + ++ +R +R+
Sbjct: 20 KKQKKQKKKKEEEEEEEEENEEEERRRKRRRRRRR 54
>SB_17041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 668
Score = 28.3 bits (60), Expect = 5.8
Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Frame = +2
Query: 206 TDDEEKEDIVNIPNLRDTQKVFHALHHRSC-EDMKLTKIRNLMKFREKSRMRT---K*KP 373
T +++++ N N R+T+K + + +K K++ + +EK + R K K
Sbjct: 16 TRKKKRKNKCNNVNGRETKKNKTSKTSKGMLSTLKPAKVKEGQRRKEKKKRRKSDKKEKA 75
Query: 374 RNPKELNVKPINQILKVRVARSYRNPKVSPKSSVRRRVHLREIRNQKRE 520
++P+E NVK + K + +S ++ S K + + + ++ +KR+
Sbjct: 76 KDPRECNVKKATRNKKAKKEKSEKS-HFSFKVNTIKNTNAEKVNKKKRK 123
>SB_12881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 368 KPRNPKELNVKPINQILKVRVARSYRNPKVSPKSS 472
KPRN + + KPI+ L R R N + SP S+
Sbjct: 875 KPRNLDQYSFKPISPRLGGRTIRGSNNSRKSPDST 909
>SB_11062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 238 YSKPA*YSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESKRA 390
Y++P + +R P P + R I + +D+VS + +D ++ + S+RA
Sbjct: 44 YTEPR--TPPFNRRPLPVVPRSPIARVANNDQVSDERPRDDSVQRQVSERA 92
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 271 SRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAK 393
SR+ SP ++H+ + K+ DE K + EDE TKE K
Sbjct: 282 SRSHSPEKKKHKKKEKKEKDE-KRKSRAEDEGLTKEQLEIK 321
>SB_44086| Best HMM Match : BTB (HMM E-Value=1.8e-23)
Length = 417
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -1
Query: 649 NPTNDSFFPGFLANSF*HPFAFPLPN 572
NPTN S++ GF+ SF HP LPN
Sbjct: 353 NPTNGSYYNGFVV-SFDHPVTI-LPN 376
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,147
Number of Sequences: 59808
Number of extensions: 289470
Number of successful extensions: 1239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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