Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30383
         (658 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    26   1.2  
CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal ...    23   8.5  
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         23   8.5  

>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 155 EKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLRDTQKVFHALHHRSCEDM-KLTKIRNLM 331
           ++ P   FN    +SD  DDEE        NL D  +   +  H + E + ++   RN++
Sbjct: 95  QRKPSTRFNVEGGESDSNDDEE-------DNLIDENRYARSFRHFTREALPRMDNYRNIL 147

Query: 332 KFREKSR 352
            F+   R
Sbjct: 148 SFQGNQR 154


>CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal RNA
           adenine dimethylaseprotein.
          Length = 375

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 283 SPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRK 399
           SPF++  E  K+K+       + +E   +  E +RAK K
Sbjct: 331 SPFMQAVESQKHKQQRFARSLDDDESADEPGELQRAKSK 369


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = +2

Query: 170 EPFNDGKTQSDHTDDEEKEDIVNIPN 247
           +P  DG+ + D  +D+ + ++ +IP+
Sbjct: 287 KPDTDGEPEKDEENDDLRRELKSIPD 312


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,597
Number of Sequences: 2352
Number of extensions: 9000
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65232180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)