Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30383
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical...    30   1.3  
Z70309-5|CAB54290.2|  402|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z70309-4|CAA94359.2|  388|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    29   2.2  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      29   2.2  
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    29   3.8  
L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting...    29   3.8  
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    29   3.8  
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting...    29   3.8  
Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U50069-1|AAB37559.2|  884|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>AF047659-10|AAC04430.1|  798|Caenorhabditis elegans Hypothetical
           protein K07H8.10 protein.
          Length = 798

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 149 AVEKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLR 253
           A+E+   +   D + + D  D+EE+ED  N+P ++
Sbjct: 423 AIEEDSDDEDEDEEEEEDEEDEEEEEDTTNVPLIK 457


>Z70309-5|CAB54290.2|  402|Caenorhabditis elegans Hypothetical
           protein R102.5b protein.
          Length = 402

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 301 HEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRKAHQ 408
           HEI++NKK  E     +NE E+K +ES  +  K  Q
Sbjct: 175 HEIEENKKLSEKMEVMKNEFELKMQESAASVEKVIQ 210


>Z70309-4|CAA94359.2|  388|Caenorhabditis elegans Hypothetical
           protein R102.5a protein.
          Length = 388

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 301 HEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRKAHQ 408
           HEI++NKK  E     +NE E+K +ES  +  K  Q
Sbjct: 175 HEIEENKKLSEKMEVMKNEFELKMQESAASVEKVIQ 210


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +1

Query: 295 RRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRK 399
           ++++  K++++D+ S    +ED+ K K SKR KR+
Sbjct: 295 KKNKKSKSRETDDDSDGSDSEDDWKEKSSKRIKRE 329


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = +1

Query: 295 RRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRK 399
           ++++  K++++D+ S    +ED+ K K SKR KR+
Sbjct: 295 KKNKKSKSRETDDDSDGSDSEDDWKEKSSKRIKRE 329


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 292 LRRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRKA 402
           L+ +E +K KK  E   K++ E EIK K  +  K+KA
Sbjct: 569 LKIYEEEKRKKELEEERKKKEELEIKRKAEEEKKKKA 605


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 213 protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +1

Query: 277  TPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRKAHQ 408
            +P P  +   +D+ K+SDE S K++ E    T+  K   +K  +
Sbjct: 1261 SPPPAKKTRIVDRLKRSDEPSKKDEKESPKDTESEKGEGKKRRE 1304


>L15188-6|AAA27950.2| 1132|Caenorhabditis elegans Gex interacting
           protein protein8, isoform a protein.
          Length = 1132

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 155 EKPPPEPFNDGKTQSDHTDDEEKEDIVNI 241
           + PPPEP +  + +SD  D EE  DI+ I
Sbjct: 674 QPPPPEPMDTKENESD--DGEEDNDILEI 700


>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
           protein protein8, isoform b protein.
          Length = 1780

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 155 EKPPPEPFNDGKTQSDHTDDEEKEDIVNI 241
           + PPPEP +  + +SD  D EE  DI+ I
Sbjct: 674 QPPPPEPMDTKENESD--DGEEDNDILEI 700


>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
           protein protein8, isoform c protein.
          Length = 1697

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 155 EKPPPEPFNDGKTQSDHTDDEEKEDIVNI 241
           + PPPEP +  + +SD  D EE  DI+ I
Sbjct: 674 QPPPPEPMDTKENESD--DGEEDNDILEI 700


>Z81532-6|CAB04326.3| 1128|Caenorhabditis elegans Hypothetical
           protein F36F2.3a protein.
          Length = 1128

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 8/38 (21%), Positives = 25/38 (65%)
 Frame = +1

Query: 295 RRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRKAHQ 408
           ++H+  K +K  +   ++++ED++ T++ ++ K + +Q
Sbjct: 795 KKHKKHKKEKKSKKEKRDEDEDDLDTEKKEKKKERKYQ 832


>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
           protein ZK154.5 protein.
          Length = 1105

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 152 VEKPPPEPFNDGKTQS-DHTDDEEKEDIVNIPNLRDTQKVFHALHH 286
           +E P P PF   K +  +HT+ E+K +I++ P ++D  +      H
Sbjct: 364 IETPRP-PFKKPKQEEQEHTNGEKKPEILDEPIIQDEPRTMRPHEH 408


>U50069-1|AAB37559.2|  884|Caenorhabditis elegans Hypothetical
           protein C09B9.3 protein.
          Length = 884

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
 Frame = +2

Query: 200 DHTDDEEKEDIVNIPNLRDTQKVFHALHHRSCEDMKLTK---IRNLMKFREKSRMRTK*K 370
           D TD  EKE   N  N + +    +       E+MK+ K   ++ + K +E  ++    K
Sbjct: 465 DRTDSVEKESDKNTKNKKKSSGEQNKTVKSGAENMKILKPDAVKYVEKQKELEKLNAAKK 524

Query: 371 PRNPKELNVKPINQILKVRVA-RSYRNPKVSPKSSVRRRVHLREIR 505
                EL      +  K+R+A R+     V+ +  V R + +R +R
Sbjct: 525 EEERMELEKLDAERKNKLRMARRTIIRYLVASQVLVLRTISMRTLR 570


>U97006-5|AAC47967.1|  222|Caenorhabditis elegans Hypothetical
           protein C13F10.7 protein.
          Length = 222

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 295 RRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRK 399
           RR   D +  SD  S +E++    K+KESK+ KRK
Sbjct: 162 RRRRDDSDDSSD--SDEEEDRKRKKSKESKKEKRK 194


>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
           protein B0496.3a protein.
          Length = 1551

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 200 DHTDDEEKEDIVNIPNLRDTQKVFHALHHRSCED-MKLTKIRNLMKFREKSRMRTK*KP 373
           DHT   E+E+ + + +L D Q VF    H S E   K+   R   K  E+    +  KP
Sbjct: 345 DHTPLTEREETMIVQDLADEQDVFMEFGHLSSETRRKIEDFRIRRKEAEEFNDNSPVKP 403


>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
           protein B0496.3b protein.
          Length = 1592

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = +2

Query: 200 DHTDDEEKEDIVNIPNLRDTQKVFHALHHRSCED-MKLTKIRNLMKFREKSRMRTK*KP 373
           DHT   E+E+ + + +L D Q VF    H S E   K+   R   K  E+    +  KP
Sbjct: 345 DHTPLTEREETMIVQDLADEQDVFMEFGHLSSETRRKIEDFRIRRKEAEEFNDNSPVKP 403


>U41992-7|AAA83358.1|  374|Caenorhabditis elegans Hypothetical
           protein F32E10.6 protein.
          Length = 374

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 256 YSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRKA 402
           Y  S    P P  + ++   +KKS + S K +++D    +E +  K K+
Sbjct: 165 YKDSHDMKPPPVKKSNKKKGSKKSPKKSAKSKDDDSSDEEEEEEVKEKS 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,802
Number of Sequences: 27780
Number of extensions: 226639
Number of successful extensions: 1122
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)