Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30383
(658 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family... 30 1.2
At4g26630.1 68417.m03837 expressed protein 30 1.6
At2g17510.1 68415.m02025 ribonuclease II family protein similar ... 28 4.8
At1g24120.1 68414.m03043 DNAJ heat shock protein, putative simil... 28 4.8
At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD, chlor... 28 4.8
At4g08310.1 68417.m01372 expressed protein glutamic acid-rich pr... 28 6.3
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 28 6.3
At2g46330.2 68415.m05765 arabinogalactan-protein (AGP16) identic... 28 6.3
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 6.3
At5g48610.1 68418.m06012 expressed protein ; expression supporte... 27 8.3
At3g58660.1 68416.m06538 60S ribosomal protein-related contains ... 27 8.3
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051... 27 8.3
At1g29320.1 68414.m03584 transducin family protein / WD-40 repea... 27 8.3
>At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; similar to hydroxyproline-rich
Glycoprotein (HRGP) [Zea mays] gi|4007865|emb|CAA10387
Length = 343
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 161 PPPEPFNDGKTQSDHTDDEEKEDIVNIPNLRDTQK 265
PPP + D +T SD DD + ++P+L T +
Sbjct: 143 PPPPMYGDVETSSDIFDDASSDSFSSVPSLLATNR 177
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +1
Query: 310 DKNKKSDEVSGKE-QNEDEIKTKESKRAKRKAHQ 408
D+NK+ + V GKE ++++E KTKE + AK + +
Sbjct: 204 DENKQVENVEGKEKEDKEENKTKEVEAAKAEVDE 237
>At2g17510.1 68415.m02025 ribonuclease II family protein similar to
SP|P37202 Mitotic control protein dis3
{Schizosaccharomyces pombe}; contains Pfam profile
PF00773: RNB-like protein
Length = 933
Score = 28.3 bits (60), Expect = 4.8
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +2
Query: 146 VAVEKPPPEPFNDGKTQSDHTDDEEKEDIVNI-PNLRDTQKVFHALHHRSCEDMKLTKIR 322
VAVE P + + D K S +D+E++D V++ P+ D L H + D +R
Sbjct: 277 VAVELLPRDQWQDEKALSIAEEDDEEDDTVHLAPDNVDDAPRTSNLSHETSGDKNAAPVR 336
>At1g24120.1 68414.m03043 DNAJ heat shock protein, putative similar
to Altered Response to Gravity [Arabidopsis thaliana]
GI:4249662; contains Pfam profile PF00226 DnaJ domain
Length = 436
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/49 (20%), Positives = 29/49 (59%)
Frame = +1
Query: 256 YSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRKA 402
+ K+ ++ P+P + E ++ ++ +E S +++N+ +S+ K+K+
Sbjct: 373 FKKAAAKAPAPTEQEEEEEEEEEEEEESSRQKNKKPSTCDKSETLKKKS 421
>At1g08520.1 68414.m00943 magnesium-chelatase subunit chlD,
chloroplast, putative / Mg-protoporphyrin IX chelatase,
putative (CHLD) similar to Mg-chelatase SP|O24133 from
Nicotiana tabacum, GB:AF014399 GI:2318116 from [Pisum
sativum]
Length = 760
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 161 PPPEPFNDGKTQSDHTDDEEKEDIVNIPNLRDTQK 265
PPP+ G+ +++ +EE+ED N N + Q+
Sbjct: 416 PPPQNSESGEEENEEEQEEEEEDESNEENENEQQQ 450
>At4g08310.1 68417.m01372 expressed protein glutamic acid-rich
protein precursor - Plasmodium falciparum, PIR2:A54514
Length = 504
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 161 PPPEPFNDGKTQSDHTDDEEKED 229
PPP+P +++SD ++D E E+
Sbjct: 438 PPPKPIKAEESESDDSEDSENEE 460
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 174 GSGGGFSTATDDSRLVLDIMRSLDSH 97
G GGG +A D S+ ++DI++ + SH
Sbjct: 85 GGGGGVKSAGDKSQPLIDIIKLIRSH 110
>At2g46330.2 68415.m05765 arabinogalactan-protein (AGP16) identical
to gi|10880509|gb|AAG24284
Length = 57
Score = 27.9 bits (59), Expect = 6.3
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -1
Query: 457 YFWISIAPRYSHFQ 416
YF +S+ PRYSHFQ
Sbjct: 43 YFSLSLLPRYSHFQ 56
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase family
protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 170 EPFNDGKTQS---DHTDDEEKEDIVNIPNLRDTQKVFHALHHRSCEDMKLTKI 319
E F DG Q+ + T D+E +VN+ T+ V H +H R C K +I
Sbjct: 1049 EEFVDGIPQNWWCEDTRDKEAILVVNVQGGCSTETVCHRVHVRHCFSAKNLRI 1101
>At5g48610.1 68418.m06012 expressed protein ; expression supported
by MPSS
Length = 470
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +2
Query: 149 AVEKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLRDTQKVFHALHHRSCEDMKLTKIRNL 328
A +K + + KT+S + +EK ++ P L + +K L + D+ T I+NL
Sbjct: 229 AKDKDRNKEKKEEKTESINKTRQEKPKLIRGPKLEEREKDSPDLRNCKLPDVSRTSIKNL 288
>At3g58660.1 68416.m06538 60S ribosomal protein-related contains
weak similarity to 60S ribosomal protein L10A (CSA-19)
(NEDD-6) (Swiss-Prot:P53026) [Mus musculus]
Length = 446
Score = 27.5 bits (58), Expect = 8.3
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 328 DEVSGKEQNEDEIKTKESKRAKRK 399
DE+ G E N + ++++E K KRK
Sbjct: 328 DEIGGDEDNNEIVESEEKKMKKRK 351
>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
Krr1 family
Length = 638
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 310 DKNKKSDEVSGKEQNEDEIKTKESKRAKRK 399
DK+ K E + EDE+ K++K+ K+K
Sbjct: 95 DKDAKFYEYDDESSEEDEVDKKDTKKKKKK 124
>At1g29320.1 68414.m03584 transducin family protein / WD-40 repeat
family protein contains 3 WD-40 repeats (PF00400);
similar to meiotic recombination protein REC14
(GI:11139242) [Homo sapiens]; similar to unknown protein
GI:13623493 [Homo sapiens]
Length = 468
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 9/44 (20%)
Frame = +1
Query: 292 LRRHEIDKNKKSDEV----SGKEQNEDEI-----KTKESKRAKR 396
++R + K K+S E+ E+NEDEI KTK+SK+ KR
Sbjct: 390 VKRKKSKKEKRSREIVFEGEDDEENEDEIEKAPVKTKKSKKEKR 433
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,585,046
Number of Sequences: 28952
Number of extensions: 210339
Number of successful extensions: 938
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -