Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30382
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2... 126 3e-30
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.48
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces... 29 0.64
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 27 2.0
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.0
SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces ... 27 2.6
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 26 4.5
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 26 6.0
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce... 26 6.0
>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 126 bits (304), Expect = 3e-30
Identities = 54/79 (68%), Positives = 66/79 (83%)
Frame = +1
Query: 16 SSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDGPDEEG 195
S DHAS+RRG++VY++VC ACHSL IA+R+LV VTHT DEAK A+EV +DGPD+EG
Sbjct: 84 SGFDHASLRRGFQVYREVCSACHSLNLIAWRHLVGVTHTADEAKQMASEVEYEDGPDDEG 143
Query: 196 NYFERPGKLSDYLPSPYPN 252
N F+RPGKLSD+LP PYPN
Sbjct: 144 NMFKRPGKLSDFLPPPYPN 162
Score = 115 bits (277), Expect = 6e-27
Identities = 52/92 (56%), Positives = 68/92 (73%)
Frame = +3
Query: 288 PPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEAA 467
PPDLS + GR GG+DYI++LLTGY EPPAGV + +G N+NP+FPG I+MA+ LFD+A
Sbjct: 175 PPDLSCVVRGRHGGQDYIYSLLTGYTEPPAGVEVPDGMNFNPFFPGTQIAMARPLFDDAV 234
Query: 468 EYSDGTPATASQLARMLRLS*NGGPEPELDDR 563
E+ DGTPAT +Q A+ + + EPELD R
Sbjct: 235 EFEDGTPATTAQAAKDVVNFLHWASEPELDIR 266
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.48
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Frame = -2
Query: 640 PACSSRQPAAKHGEPCRIAFEGQFAERSSSSGSGPPFQESRNI--LASCDAVAGVPSLYS 467
PA +S R++ A + PP + +R + + + + +P
Sbjct: 282 PAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341
Query: 466 AASSNRTCAIEMAPPGKYGL*FCPSRSTTPAGGSM*PVSSAKM*SSPPLRPEQIRDKS 293
SN +I + P G+ P RS G P+SS++ S+PP P I +S
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRS 399
>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 29.1 bits (62), Expect = 0.64
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 RKGGEDY-IFALLTGYMEPPAGVVLREGQNYNPYF 419
R G Y + A L + PP G ++R +Y PYF
Sbjct: 197 RNNGPSYSLLASLASQLPPPYGAMIRHTTSYVPYF 231
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -3
Query: 417 SMDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHH 277
S D +SV +LH++ + N S R+ + R+PY SE S + K H
Sbjct: 103 SFDHASV--TSLHRRSLSSNTSTPRKYHSRKPY----SEPSVIDKEH 143
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +3
Query: 369 PPAGVVLREGQNYNPYFPGGAISMAQVLFDEAAEYSDGTPATAS 500
P + V +NY PY ++S + +L + S TP TAS
Sbjct: 60 PTSNVASNTSENY-PYTGSKSLSSSSILSNSTISTSSSTPITAS 102
>SPBC2F12.14c |gua1||IMP dehydrogenase Gua1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 524
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 348 LLTGYMEPPAGVVLREGQNYNPYFPGGAIS 437
LL G E P +REGQ Y Y G+I+
Sbjct: 395 LLAGTTESPGEYYVREGQRYKSYRGMGSIA 424
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -3
Query: 582 LRVNLPNGRQVRVLDHHFK---KVATSLRAVTQSPACRHCT 469
L++ + + R V+ +F+ K+ SLR V +S AC+ CT
Sbjct: 65 LKIKISDIRDVQHTSRYFRSSPKIRLSLRHVEKSWACKICT 105
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 375 QEVPCNQSVARRCNLRRPY 319
+E+PC Q V R C+L++ Y
Sbjct: 103 EEMPCEQLVRRVCDLKQGY 121
>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -3
Query: 555 QVRVLDHHFKKVATSLRAVTQSPACRHC 472
Q+ + DH KKV + V +P+ HC
Sbjct: 276 QISIFDHSKKKVIGRFQGVKGAPSSIHC 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,227
Number of Sequences: 5004
Number of extensions: 58544
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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