Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30382
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 121 5e-28
01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305 38 0.006
04_01_0259 + 3422055-3422462,3499540-3499671 31 0.88
05_05_0045 + 21830291-21830343,21830446-21830541,21830620-218306... 31 1.2
04_04_1327 + 32677408-32677460,32677563-32677658,32677737-326778... 31 1.2
04_03_0540 + 16929782-16929834,16929937-16930032,16930111-169301... 31 1.2
01_06_1350 + 36505926-36505978,36506081-36506176,36506255-365063... 31 1.2
07_03_1249 - 25172651-25172893,25173001-25173355,25173435-251735... 29 3.5
02_02_0130 + 7062063-7063370 28 6.2
07_03_1221 + 24968710-24969123 28 8.2
05_05_0001 + 21410408-21411391 28 8.2
01_01_1218 + 9846644-9847837 28 8.2
01_01_0816 + 6360526-6360802,6360902-6361117,6361231-6361379,636... 28 8.2
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 121 bits (292), Expect = 5e-28
Identities = 51/85 (60%), Positives = 66/85 (77%)
Frame = +1
Query: 1 HSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDG 180
H+G SS DHAS+RRG++VY QVC +CHS+ I++R+LV V +TE+E KA AAE+ + DG
Sbjct: 460 HAGILSSYDHASIRRGHQVYTQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDG 519
Query: 181 PDEEGNYFERPGKLSDYLPSPYPNE 255
P++EG F RPGKLSD P PYPNE
Sbjct: 520 PNDEGEMFTRPGKLSDRFPQPYPNE 544
Score = 121 bits (291), Expect = 6e-28
Identities = 53/93 (56%), Positives = 70/93 (75%)
Frame = +3
Query: 285 YPPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEA 464
YPPDLSLI R G++Y+FALLTGY +PPAGV +REG +YNPYFPGGAI+M ++L D A
Sbjct: 555 YPPDLSLITKARHNGQNYVFALLTGYRDPPAGVQIREGLHYNPYFPGGAIAMPKMLIDGA 614
Query: 465 AEYSDGTPATASQLARMLRLS*NGGPEPELDDR 563
EY DGTPAT +Q+ + + + EPE+++R
Sbjct: 615 VEYEDGTPATEAQMGKDVVSFLSWAAEPEMEER 647
>01_07_0097 + 41070877-41070942,41071039-41071104,41071189-41071305
Length = 82
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/42 (40%), Positives = 27/42 (64%)
Frame = +3
Query: 438 MAQVLFDEAAEYSDGTPATASQLARMLRLS*NGGPEPELDDR 563
M ++L D A EY DGTPAT +Q+ + + + EPE+++R
Sbjct: 1 MPKMLIDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEER 42
>04_01_0259 + 3422055-3422462,3499540-3499671
Length = 179
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 130 TEDEAKAEAAEVMIKDGPDEE-GNYFERPGKLSDYLPSPYPNEMRL 264
TE+ + A +M +DG DE+ GN GK +P P P+ M L
Sbjct: 64 TEEIQTPDRAAIMFRDGFDEDYGNTLNYFGKKKPLVPLPPPDPMEL 109
>05_05_0045 +
21830291-21830343,21830446-21830541,21830620-21830694,
21831329-21831403,21831497-21831719,21831813-21832056,
21832621-21832769,21832913-21832944,21832991-21833078,
21833157-21833438,21833542-21834243
Length = 672
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -2
Query: 655 VDPLCPACSSRQPAAKHGEPCRIAFEGQFAERSSSSGSGPPFQESRNILASCDAVAGVP 479
VD + + QP G+ R+A E R S SG E+RN++ S D G P
Sbjct: 32 VDGISQSVHDSQPDG--GQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNP 88
>04_04_1327 +
32677408-32677460,32677563-32677658,32677737-32677811,
32678446-32678520,32678615-32678837,32678931-32679174,
32679740-32680197,32680276-32680470,32680660-32681361
Length = 706
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -2
Query: 655 VDPLCPACSSRQPAAKHGEPCRIAFEGQFAERSSSSGSGPPFQESRNILASCDAVAGVP 479
VD + + QP G+ R+A E R S SG E+RN++ S D G P
Sbjct: 32 VDGISQSVHDSQPDG--GQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNP 88
>04_03_0540 +
16929782-16929834,16929937-16930032,16930111-16930185,
16930819-16930893,16930987-16931209,16931303-16931546,
16932111-16932568,16932647-16932928,16933032-16933733
Length = 735
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -2
Query: 655 VDPLCPACSSRQPAAKHGEPCRIAFEGQFAERSSSSGSGPPFQESRNILASCDAVAGVP 479
VD + + QP G+ R+A E R S SG E+RN++ S D G P
Sbjct: 32 VDGISQSVHDSQPDG--GQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNP 88
>01_06_1350 +
36505926-36505978,36506081-36506176,36506255-36506329,
36506964-36507038,36507132-36507348,36507442-36507685,
36508250-36508707,36508786-36509067,36509171-36509872
Length = 733
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = -2
Query: 655 VDPLCPACSSRQPAAKHGEPCRIAFEGQFAERSSSSGSGPPFQESRNILASCDAVAGVP 479
VD + + QP G+ R+A E R S SG E+RN++ S D G P
Sbjct: 32 VDGISQSVHDSQPDG--GQSSRVAMEEDVPSRVGSHDSGHGIPETRNLVPSLDWTEGNP 88
>07_03_1249 -
25172651-25172893,25173001-25173355,25173435-25173593,
25173809-25174269,25175137-25175322,25175429-25175800
Length = 591
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 211 PGKLSDYLPSPYPNEMRLVLQTMVLTHRT 297
PGK DY+ SP PN + L T+VL+ T
Sbjct: 379 PGKFKDYINSPKPNGYQ-SLHTVVLSEET 406
>02_02_0130 + 7062063-7063370
Length = 435
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = -2
Query: 643 CPACSSRQPAAKHGEPCRIAFEG--QFAER-SSSSGSGPPFQESRNILASCDAVAGVPS 476
C R ++ PCR A G + A+ SSSSGSG P S N+ D +A VP+
Sbjct: 16 CAGQRLRPRPSRIAAPCRAAVSGGVRTAQSPSSSSGSGSPSSMSLNL----DWIAAVPA 70
>07_03_1221 + 24968710-24969123
Length = 137
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -3
Query: 582 LRVNLPNGRQVRVLDHHFKKVATSLRAVTQSPACRHCTQLLRQIELAP*RWHLLGSMDCS 403
LR +++R L HH +A A + P HC + +E A W + G D S
Sbjct: 55 LRAKTDCNKEMRNLVHHLVHLARRCPAYHKPPPTPHCCRRCLTLEHARRMW-VGGEDDQS 113
Query: 402 SVPHVALHQQEVPCNQS 352
+ H L EV +S
Sbjct: 114 ANAHGPLDLTEVLTERS 130
>05_05_0001 + 21410408-21411391
Length = 327
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -3
Query: 606 MENHAE*LLRVNLPNGRQVRVLDHHFKKVATSLRAVTQSPAC 481
+ +H E +L GR+ V+DHH ++ ++ P C
Sbjct: 2 LSSHCESMLAYAAAAGRRAVVVDHHQRRYRPNVEVAPNCPRC 43
>01_01_1218 + 9846644-9847837
Length = 397
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 514 CCDFLEMVVQNPNLTTVRQIDPQKLFGMVLHALP 615
CC +E+ NLT +R +D QK G V ++P
Sbjct: 87 CCCLIELPESTMNLTKLRHLDVQKEPGNVHVSMP 120
>01_01_0816 +
6360526-6360802,6360902-6361117,6361231-6361379,
6361474-6361750,6362228-6362457
Length = 382
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +3
Query: 300 SLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEAAEY 473
SL G GG DY+F L AG + E +Y P G + + + +E A Y
Sbjct: 173 SLFFMGEFGGNDYVFLL-------AAGKTVDEAMSYVPKVVGVISAGVEAVIEEGARY 223
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,166,005
Number of Sequences: 37544
Number of extensions: 477230
Number of successful extensions: 1415
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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