Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30382
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23565| Best HMM Match : Cytochrom_C1 (HMM E-Value=3.8e-15)         120   9e-28
SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)           87   1e-17
SB_58357| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_48339| Best HMM Match : BAG (HMM E-Value=5.9)                       34   0.13 
SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.13 
SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.13 
SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.13 
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)                 32   0.51 
SB_49990| Best HMM Match : PAN (HMM E-Value=0.12)                      30   1.6  
SB_4785| Best HMM Match : Dynein_heavy (HMM E-Value=0)                 29   3.6  
SB_21936| Best HMM Match : Collagen (HMM E-Value=1.1e-07)              29   4.8  
SB_16433| Best HMM Match : DUF1332 (HMM E-Value=5.4)                   29   4.8  
SB_23782| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_50889| Best HMM Match : Collagen (HMM E-Value=0.77)                 28   8.4  
SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05)               28   8.4  
SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)             28   8.4  
SB_10506| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)             28   8.4  

>SB_23565| Best HMM Match : Cytochrom_C1 (HMM E-Value=3.8e-15)
          Length = 134

 Score =  120 bits (290), Expect = 9e-28
 Identities = 52/85 (61%), Positives = 67/85 (78%)
 Frame = +1

Query: 1   HSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDG 180
           H+G F+S+DH S+RRG++VY+QVC ACHS+  +AFR+LV V +TEDE KA AAE  + DG
Sbjct: 41  HNGVFNSIDHDSIRRGFQVYRQVCAACHSMNRLAFRHLVGVCYTEDEMKAIAAEYDVVDG 100

Query: 181 PDEEGNYFERPGKLSDYLPSPYPNE 255
           P+++G  F RPGKLSD LP PY NE
Sbjct: 101 PNDQGEMFTRPGKLSDPLPEPYANE 125


>SB_8522| Best HMM Match : Cytochrom_C1 (HMM E-Value=1.2e-06)
          Length = 127

 Score = 87.0 bits (206), Expect = 1e-17
 Identities = 38/60 (63%), Positives = 46/60 (76%)
 Frame = +3

Query: 333 DYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEAAEYSDGTPATASQLAR 512
           DY+F LLTGY +PPAGV +R+   +N YFPG AI MAQ L++E  EY DGTPAT SQLA+
Sbjct: 1   DYVFHLLTGYADPPAGVEIRDDLYFNAYFPGQAIGMAQALYNEIIEYEDGTPATTSQLAK 60


>SB_58357| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 357 QSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFIG 247
           QSVARR N+ R    +RS +SP G+   L H P   G
Sbjct: 9   QSVARRWNIHRIRPSTRSNSSPPGRRCFLYHYPEMTG 45


>SB_48339| Best HMM Match : BAG (HMM E-Value=5.9)
          Length = 404

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = -3

Query: 414 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFIG 247
           ++C    ++ + Q+E+   QSVARR N+ R    +RS  SP G+   L H P   G
Sbjct: 340 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTG 392


>SB_39330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = -3

Query: 414 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFIG 247
           ++C    ++ + Q+E+   QSVARR N+ R    +RS  SP G+   L H P   G
Sbjct: 16  VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTG 68


>SB_5356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = -3

Query: 414 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFIG 247
           ++C    ++ + Q+E+   QSVARR N+ R    +RS  SP G+   L H P   G
Sbjct: 112 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTG 164


>SB_4819| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = -3

Query: 414 MDCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFIG 247
           ++C    ++ + Q+E+   QSVARR N+ R    +RS  SP G+   L H P   G
Sbjct: 112 VECLKFCYMGVLQREL---QSVARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTG 164


>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
          Length = 1427

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 21/86 (24%), Positives = 33/86 (38%)
 Frame = +3

Query: 312 SGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEAAEYSDGTPA 491
           SG  G   +  +   G    PAG +    ++ +     G +S +Q        +S G P 
Sbjct: 421 SGTHGTSSHSSSSFHGASSQPAGSLSVNARSSSSSHVTGPVSQSQASRRNRPLFSSGNPP 480

Query: 492 TASQLARMLRLS*NGGPEPELDDRSA 569
             + L+R  RL  N  P P   +  A
Sbjct: 481 RRNSLSRQTRLEVNRTPSPTFSEPHA 506


>SB_49990| Best HMM Match : PAN (HMM E-Value=0.12)
          Length = 310

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +1

Query: 106 RNLVNVTHTEDEAKAEAA----EVMIKDGPDEEGNYFERPGKLSD 228
           +N++N   ++ EA A+ +    E++ K+GP  +G Y+  PG  S+
Sbjct: 39  KNMMNANESDIEADADFSLFNREILDKEGPGPDGEYYIDPGSGSN 83


>SB_4785| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 623

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
 Frame = +1

Query: 178 GPDEEGNYFERPGKLSDYLPSPY-PNEMRLVLQTM-VLTHRTC-L*SARDVRAAKITSSR 348
           G   E   F++  ++ D LP  Y P+E+R  LQ M  LT     L    D     IT+ R
Sbjct: 390 GETRESLVFKQANEMLDKLPPDYVPHEVRSRLQKMGALTSMNIFLRQEIDRMQRVITAVR 449

Query: 349 Y*LVTWNL-----LLV*CYVRDRTTIHTSQEVPSLWRKFYLTKQLSTVT 480
             L+   L     +++   ++D         VP+LW+K +LT     +T
Sbjct: 450 TTLIDLKLAIDGTIIMSENLKDALDNIYDARVPALWKKGFLTAMRQEIT 498


>SB_21936| Best HMM Match : Collagen (HMM E-Value=1.1e-07)
          Length = 195

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 215 VNFLTTCRLHTPMKCGSCCKQW 280
           V F+ T R+H    C SCCK+W
Sbjct: 127 VQFIGTFRIHN---CNSCCKRW 145


>SB_16433| Best HMM Match : DUF1332 (HMM E-Value=5.4)
          Length = 343

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 351 VARRCNLRRPYVPSRSETSPVGKHHCLQHEPHFIG 247
           VARR N+ R    +RS  SP G+   L H P   G
Sbjct: 240 VARRWNIHRIRPSTRSNISPPGRPCFLYHYPEMTG 274


>SB_23782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -3

Query: 411 DCSSVPHVALHQQEVPCNQSVARRCNLRRPYVPSRSE 301
           D +  P + L + E+PCN  +A+  N+++ + P  ++
Sbjct: 26  DSNQQPRINLQENEIPCN--IAQPVNIKKSFEPDSNQ 60


>SB_50889| Best HMM Match : Collagen (HMM E-Value=0.77)
          Length = 345

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/30 (56%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -2

Query: 613 AKHGEPC-RIAFE--GQFAERSSSSGSGPP 533
           A+ GEPC  IA E  G FAE SS    GPP
Sbjct: 271 AETGEPCTHIAVEPRGGFAESSSLDEHGPP 300


>SB_31380| Best HMM Match : zf-CCHC (HMM E-Value=4.6e-05)
          Length = 1082

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = -3

Query: 639  PLVVVDNRRQSMENHAE*LLRVNLPNGRQVRVLDHHFKKVATSLRAVTQSPACRHCTQLL 460
            P + V    +     +E +++ +  N   V + DHH   V     +VTQ+P  R   +++
Sbjct: 1015 PDITVPESCEQGGTESETMIQSDKVNQPAVNISDHHVTPVKPQDNSVTQTPVLRRSQRVV 1074

Query: 459  RQI 451
            + +
Sbjct: 1075 KPV 1077


>SB_57858| Best HMM Match : RNA_pol_A_CTD (HMM E-Value=5.7)
          Length = 280

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +1

Query: 40  RRGYEVYKQVCKACHSLQYIAFRNL--VNVTHTEDEAKAEAAEVMIKDGPDEEGNYFE 207
           +R Y  YK+  KAC   +Y  F+ L  + +   +DE  A+     +K+ P +  +Y +
Sbjct: 13  KRLYNNYKKSGKACDKEKYRKFQKLFKIKMKKAQDEYIADTLNSDLKEKPKKFWSYIK 70


>SB_10506| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
          Length = 666

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/63 (22%), Positives = 29/63 (46%)
 Frame = -3

Query: 639 PLVVVDNRRQSMENHAE*LLRVNLPNGRQVRVLDHHFKKVATSLRAVTQSPACRHCTQLL 460
           P + V    +     +E +++ +  N   V + DHH   V     +VTQ+P  R   +++
Sbjct: 599 PDITVPESCEQGGTESETMIQSDKVNQPAVNISDHHVTPVKPQDNSVTQTPVLRRSQRVV 658

Query: 459 RQI 451
           + +
Sbjct: 659 KPV 661


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,381,988
Number of Sequences: 59808
Number of extensions: 490279
Number of successful extensions: 1432
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)