Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30382
(698 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical pr... 115 4e-26
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 31 1.0
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 30 1.4
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 30 1.4
AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical... 28 5.6
AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine sy... 28 5.6
AC091267-1|AAK31565.1| 789|Caenorhabditis elegans Hypothetical ... 28 5.6
Z54216-7|CAI46586.1| 299|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z54216-6|CAB76416.2| 319|Caenorhabditis elegans Hypothetical pr... 28 7.4
AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation transp... 28 7.4
AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation transp... 28 7.4
AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical... 28 7.4
AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical... 28 7.4
>Z75533-7|CAA99820.1| 285|Caenorhabditis elegans Hypothetical
protein C54G4.8 protein.
Length = 285
Score = 115 bits (276), Expect = 4e-26
Identities = 54/92 (58%), Positives = 65/92 (70%)
Frame = +3
Query: 288 PPDLSLICSGRKGGEDYIFALLTGYMEPPAGVVLREGQNYNPYFPGGAISMAQVLFDEAA 467
PPDLSL+ R GG+DY+F+LLTGY+E PAGV + +G+ YNPYFPGG ISM Q LFDE
Sbjct: 146 PPDLSLMALARHGGDDYVFSLLTGYLEAPAGVKVDDGKAYNPYFPGGIISMPQQLFDEGI 205
Query: 468 EYSDGTPATASQLARMLRLS*NGGPEPELDDR 563
EY DGTPAT SQ A+ + + EP D R
Sbjct: 206 EYKDGTPATMSQQAKDVSAFMHWAAEPFHDTR 237
Score = 112 bits (269), Expect = 3e-25
Identities = 51/85 (60%), Positives = 67/85 (78%)
Frame = +1
Query: 1 HSGWFSSLDHASVRRGYEVYKQVCKACHSLQYIAFRNLVNVTHTEDEAKAEAAEVMIKDG 180
HSG FSS D ASVRRGYEVYKQVC ACHS++++ +R+ V+ TE+EAKAEAA+ +I D
Sbjct: 51 HSGPFSSFDIASVRRGYEVYKQVCAACHSMKFLHYRHFVDTIMTEEEAKAEAADALIND- 109
Query: 181 PDEEGNYFERPGKLSDYLPSPYPNE 255
D++G +RPG L+D LP+PYPN+
Sbjct: 110 VDDKGASIQRPGMLTDKLPNPYPNK 134
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/68 (29%), Positives = 29/68 (42%)
Frame = -2
Query: 658 SVDPLCPACSSRQPAAKHGEPCRIAFEGQFAERSSSSGSGPPFQESRNILASCDAVAGVP 479
S P PA +S H EP +A Q R+ S+G GP + + S A A
Sbjct: 613 SNQPPTPASASASTTL-HVEPASVAGGSQAGSRAPSAGPGPSATPDSSTIPSASAAADAQ 671
Query: 478 SLYSAASS 455
+ S+ +S
Sbjct: 672 TTTSSETS 679
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical
protein R08E3.1b protein.
Length = 1465
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 595 CRIAFEGQFAERSSSSGSGPPFQ-ESRNILASCDAVAGVPSLYSAASSNRTCAIEMAP 425
C +F+G F E S+S +G P + R+ L+S VA V +L +++ SN I P
Sbjct: 556 CLDSFKGDFCETSTSVCAGAPTSPDYRSELSSLVIVADVNALSTSSLSNTVPGITGVP 613
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical
protein R08E3.1a protein.
Length = 1512
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = -2
Query: 595 CRIAFEGQFAERSSSSGSGPPFQ-ESRNILASCDAVAGVPSLYSAASSNRTCAIEMAP 425
C +F+G F E S+S +G P + R+ L+S VA V +L +++ SN I P
Sbjct: 556 CLDSFKGDFCETSTSVCAGAPTSPDYRSELSSLVIVADVNALSTSSLSNTVPGITGVP 613
>AL110485-13|CAB60361.2| 314|Caenorhabditis elegans Hypothetical
protein Y46G5A.19 protein.
Length = 314
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 366 EPPAGVVLREGQNYNPYFPGGAISM--AQVLFDEAAEYSD 479
E P V+ +GQ +PG A S+ +VLF E ++Y D
Sbjct: 26 EEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQD 65
>AJ306734-1|CAC37332.1| 314|Caenorhabditis elegans spermidine
synthase protein.
Length = 314
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 366 EPPAGVVLREGQNYNPYFPGGAISM--AQVLFDEAAEYSD 479
E P V+ +GQ +PG A S+ +VLF E ++Y D
Sbjct: 26 EEPTKVLKSDGQEMGGAWPGQAFSLQVKKVLFHEKSKYQD 65
>AC091267-1|AAK31565.1| 789|Caenorhabditis elegans Hypothetical
protein Y37B11A.1 protein.
Length = 789
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 384 LHQQEVPCNQSVARRCNLRRPYVPSRSETS 295
++ PCNQS+ +C + P +P R + S
Sbjct: 675 MNDPNAPCNQSIPPKCPKKVPVLPVRQKRS 704
>Z54216-7|CAI46586.1| 299|Caenorhabditis elegans Hypothetical
protein T24H10.7b protein.
Length = 299
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 387 LREGQNYNPY-FPGGAISMAQVLFDEAAEYSDGTPATASQL 506
LR Q N Y F GGA+S + + A +S TPA+AS +
Sbjct: 44 LRVMQTTNKYEFTGGAVSSPVLPVLQTAAFSPITPASASDM 84
>Z54216-6|CAB76416.2| 319|Caenorhabditis elegans Hypothetical
protein T24H10.7a protein.
Length = 319
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 387 LREGQNYNPY-FPGGAISMAQVLFDEAAEYSDGTPATASQL 506
LR Q N Y F GGA+S + + A +S TPA+AS +
Sbjct: 64 LRVMQTTNKYEFTGGAVSSPVLPVLQTAAFSPITPASASDM 104
>AM419898-1|CAL99238.1| 1121|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1121
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 360 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 455
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AM419897-1|CAL99237.1| 1045|Caenorhabditis elegans cation
transporting ATPase protein.
Length = 1045
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 360 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 455
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AL132876-35|CAN99760.1| 1045|Caenorhabditis elegans Hypothetical
protein Y105E8A.12b protein.
Length = 1045
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 360 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 455
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
>AL132876-34|CAD21662.2| 1121|Caenorhabditis elegans Hypothetical
protein Y105E8A.12a protein.
Length = 1121
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 360 YMEPPAGVVLREGQNYNPYFPGGAISMAQVLF 455
++ PP+G + E QN++ + AISMA V+F
Sbjct: 306 HIPPPSGRLQTELQNFSTFISIVAISMATVVF 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,901,120
Number of Sequences: 27780
Number of extensions: 372219
Number of successful extensions: 1111
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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