Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30382
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   2.8  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.9  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   8.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   8.5  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 215 VNFLTTCRLHTPMKCGSCCKQW 280
           V+ +  C LH   +  +CC+ W
Sbjct: 383 VDRMQHCELHMQPRKKNCCRSW 404


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 215 VNFLTTCRLHTPMKCGSCCKQW 280
           V+ +  C LH   +  +CC+ W
Sbjct: 383 VDRMQHCELHMQPRKKNCCRSW 404


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 472 TVTARRRLRHSSQGCC 519
           T+T   + RH + GCC
Sbjct: 815 TMTKSGKTRHQNTGCC 830


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 577 PQKLFGMVLHALPPVVYYYKRDKVGPRSSLENFAYK 684
           PQKL        P ++   KR  + PR+ ++N  YK
Sbjct: 4   PQKLANKFYRISPQILKNDKRIYLSPRTPIKN-VYK 38


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 481 PSLYSAASSNRTCAIEMAPPGKYGL 407
           P LYS A S R C   +  P   GL
Sbjct: 9   PLLYSVAMSQRLCIQLVVGPYVIGL 33


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -2

Query: 481 PSLYSAASSNRTCAIEMAPPGKYGL 407
           P LYS A S R C   +  P   GL
Sbjct: 8   PLLYSVAMSQRLCIQLVVGPYVIGL 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,495
Number of Sequences: 438
Number of extensions: 4211
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)